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ANKRD20A4P ankyrin repeat domain 20 family member A4, pseudogene [ Homo sapiens (human) ]

Gene ID: 728747, updated on 30-Nov-2019

Summary

Official Symbol
ANKRD20A4Pprovided by HGNC
Official Full Name
ankyrin repeat domain 20 family member A4, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:31982
See related
Ensembl:ENSG00000172014
Gene type
pseudo
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ANKRD20A4
Expression
Broad expression in testis (RPKM 4.3), brain (RPKM 0.8) and 14 other tissues See more

Genomic context

See ANKRD20A4P in Genome Data Viewer
Location:
9q13
Exon count:
15
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (64369563..64412691)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (69381981..69425109)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene asparagine synthetase pseudogene Neighboring gene MT-CO1 pseudogene 36 Neighboring gene SOWAHC pseudogene 4 Neighboring gene ANKRD20A4-ANKRD20A20P readthrough Neighboring gene RNA, U6 small nuclear 1193, pseudogene Neighboring gene ankyrin repeat domain 20 family member A20, pseudogene Neighboring gene sorting nexin 18 pseudogene 9

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    64369563..64412691
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001098805.1NP_001092275.1  

    UniProtKB/Swiss-Prot
    Q4UJ75
    Conserved Domains (6) summary
    cd00204
    Location:61186
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam09731
    Location:291675
    Mitofilin; Mitochondrial inner membrane protein
    pfam12796
    Location:71163
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:3787
    Ank_4; Ankyrin repeats (many copies)
    pfam14915
    Location:514805
    CCDC144C; CCDC144C protein coiled-coil region
    sd00045
    Location:99130
    ANK; ANK repeat [structural motif]

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001098805.1: Suppressed sequence

    Description
    NM_001098805.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
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