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SLC35E2B solute carrier family 35 member E2B [ Homo sapiens (human) ]

Gene ID: 728661, updated on 18-May-2019

Summary

Official Symbol
SLC35E2Bprovided by HGNC
Official Full Name
solute carrier family 35 member E2Bprovided by HGNC
Primary source
HGNC:HGNC:33941
See related
Ensembl:ENSG00000189339
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SLC35E2
Expression
Ubiquitous expression in ovary (RPKM 17.6), endometrium (RPKM 17.1) and 25 other tissues See more
Orthologs

Genomic context

See SLC35E2B in Genome Data Viewer
Location:
1p36.33
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 1 NC_000001.11 (1659798..1692804, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (1591486..1624243, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene mindbomb E3 ubiquitin protein ligase 2 Neighboring gene matrix metallopeptidase 23B Neighboring gene cyclin dependent kinase 11B Neighboring gene ribosomal protein S7 pseudogene Neighboring gene matrix metallopeptidase 23A (pseudogene) Neighboring gene cyclin dependent kinase 11A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • FLJ43631, KIAA0447, MGC104754, MGC117254, DKFZp564C093, DKFZp686M0869

Gene Ontology Provided by GOA

Function Evidence Code Pubs
antiporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
pyrimidine nucleotide-sugar transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
blastocyst hatching IEA
Inferred from Electronic Annotation
more info
 
pyrimidine nucleotide-sugar transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
solute carrier family 35 member E2B

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_034044.1 RefSeqGene

    Range
    5001..36327
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001110781.2NP_001104251.1  solute carrier family 35 member E2B

    See identical proteins and their annotated locations for NP_001104251.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants encode the same protein.
    Source sequence(s)
    AK125619, BQ446951, DA794179, DB450858, FO704657
    Consensus CDS
    CCDS44041.1
    UniProtKB/Swiss-Prot
    P0CK96
    Related
    ENSP00000484635.1, ENST00000611123.1
    Conserved Domains (1) summary
    pfam03151
    Location:73368
    TPT; Triose-phosphate Transporter family
  2. NM_001290264.2NP_001277193.1  solute carrier family 35 member E2B

    See identical proteins and their annotated locations for NP_001277193.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AK125619, BG328537, BQ446951, CR936618, DA794179, DB450858, FO704657
    Consensus CDS
    CCDS44041.1
    UniProtKB/Swiss-Prot
    P0CK96
    Related
    ENSP00000481694.1, ENST00000617444.4
    Conserved Domains (1) summary
    pfam03151
    Location:73368
    TPT; Triose-phosphate Transporter family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p12 Primary Assembly

    Range
    1659798..1692804 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024449510.1XP_024305278.1  solute carrier family 35 member E2B isoform X1

    Conserved Domains (1) summary
    cl26744
    Location:73326
    TPT; Triose-phosphate Transporter family
  2. XM_024449511.1XP_024305279.1  solute carrier family 35 member E2B isoform X3

    Related
    ENSP00000478733.1, ENST00000614300.4
  3. XM_011542072.1XP_011540374.1  solute carrier family 35 member E2B isoform X2

    Conserved Domains (1) summary
    cl23754
    Location:83193
    EamA; EamA-like transporter family

RNA

  1. XR_002957537.1 RNA Sequence

  2. XR_001737391.1 RNA Sequence

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