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DMRTC1B DMRT like family C1B [ Homo sapiens (human) ]

Gene ID: 728656, updated on 19-Sep-2020

Summary

Official Symbol
DMRTC1Bprovided by HGNC
Official Full Name
DMRT like family C1Bprovided by HGNC
Primary source
HGNC:HGNC:31686
See related
Ensembl:ENSG00000184911
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 5.4), ovary (RPKM 3.3) and 12 other tissues See more
Orthologs

Genomic context

See DMRTC1B in Genome Data Viewer
Location:
Xq13.1
Exon count:
10
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (72777062..72848803)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (72064876..72068636)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene CAPZA1 pseudogene 3 Neighboring gene RNA, U1 small nuclear 112, pseudogene Neighboring gene family with sequence similarity 226 member B Neighboring gene family with sequence similarity 236 member B Neighboring gene family with sequence similarity 236 member D Neighboring gene DMRT like family C1 Neighboring gene family with sequence similarity 236 member C Neighboring gene family with sequence similarity 235 member A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-binding transcription factor activity, RNA polymerase II-specific ISA
Inferred from Sequence Alignment
more info
 
RNA polymerase II regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
germ cell development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
sex differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nuclear chromatin ISA
Inferred from Sequence Alignment
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
doublesex- and mab-3-related transcription factor C1
Names
DMRT-like family C1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080851.2NP_001074320.1  doublesex- and mab-3-related transcription factor C1 isoform 1

    See identical proteins and their annotated locations for NP_001074320.1

    Status: VALIDATED

    Source sequence(s)
    AC240504
    Consensus CDS
    CCDS43971.1
    UniProtKB/Swiss-Prot
    Q5HYR2
    UniProtKB/TrEMBL
    A0A024R4F7
    Related
    ENSP00000362632.3, ENST00000373532.7
    Conserved Domains (1) summary
    pfam15791
    Location:74190
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
  2. NM_001370147.1NP_001357076.1  doublesex- and mab-3-related transcription factor C1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC240504
    Related
    ENSP00000362633.1, ENST00000373533.5
    Conserved Domains (1) summary
    pfam15791
    Location:41125
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
  3. NM_001386972.1NP_001373901.1  doublesex- and mab-3-related transcription factor C1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC240504

RNA

  1. NR_170368.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC240504
  2. NR_170369.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC240504

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    72777062..72848803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006724684.3XP_006724747.1  doublesex- and mab-3-related transcription factor C1 isoform X1

    UniProtKB/Swiss-Prot
    Q5HYR2
    UniProtKB/TrEMBL
    A0A024R4F7
    Related
    ENSP00000334501.5, ENST00000334036.9
    Conserved Domains (1) summary
    pfam15791
    Location:74190
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
  2. XM_017029776.1XP_016885265.1  doublesex- and mab-3-related transcription factor C1 isoform X1

    UniProtKB/Swiss-Prot
    Q5HYR2
    UniProtKB/TrEMBL
    A0A024R4F7
    Conserved Domains (1) summary
    pfam15791
    Location:74190
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

RNA

  1. XR_938408.1 RNA Sequence

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