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PCAT18 prostate cancer associated transcript 18 [ Homo sapiens (human) ]

Gene ID: 728606, updated on 13-May-2022

Summary

Official Symbol
PCAT18provided by HGNC
Official Full Name
prostate cancer associated transcript 18provided by HGNC
Primary source
HGNC:HGNC:49211
See related
Ensembl:ENSG00000265369 MIM:617647; AllianceGenome:HGNC:49211
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01092
Expression
Biased expression in prostate (RPKM 2.5), stomach (RPKM 1.5) and 4 other tissues See more
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Genomic context

See PCAT18 in Genome Data Viewer
Location:
18q11.2
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (26687621..26703638, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (26881680..26897703, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (24267585..24283602, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene potassium channel tetramerization domain containing 1 Neighboring gene microRNA 8057 Neighboring gene cytokine induced apoptosis inhibitor 1 pseudogene Neighboring gene uncharacterized LOC102725227 Neighboring gene uncharacterized LOC124904272 Neighboring gene Sharpr-MPRA regulatory region 3190 Neighboring gene uncharacterized LOC105372035

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • long intergenic non-protein coding RNA 1092
  • prostate cancer associated transcript 18 (non-protein coding)

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024259.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012588, AK056805
    Related
    ENST00000579458.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    26687621..26703638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    26881680..26897703 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)