U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

C2orf92 chromosome 2 open reading frame 92 [ Homo sapiens (human) ]

Gene ID: 728537, updated on 4-Nov-2022

Summary

Official Symbol
C2orf92provided by HGNC
Official Full Name
chromosome 2 open reading frame 92provided by HGNC
Primary source
HGNC:HGNC:49272
See related
Ensembl:ENSG00000228486 AllianceGenome:HGNC:49272
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01125
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis (RPKM 7.5), skin (RPKM 1.9) and 16 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See C2orf92 in Genome Data Viewer
Location:
2q11.2
Exon count:
13
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (97663941..97703066)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (98127926..98161282)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (98286176..98319529)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene UBTF like 6 (pseudogene) Neighboring gene cytochrome c oxidase subunit 5B Neighboring gene actin related protein 1B Neighboring gene RNA, U4 small nuclear 8, pseudogene Neighboring gene zeta chain of T cell receptor associated protein kinase 70 Neighboring gene uncharacterized LOC124907861 Neighboring gene transmembrane protein 131

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • AC017099.3

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein C2orf92
Names
long intergenic non-protein coding RNA 1125

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001351368.2NP_001338297.1  uncharacterized protein C2orf92 isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC017099
    Consensus CDS
    CCDS86862.1
    UniProtKB/Swiss-Prot
    A0A1B0GVN3
    Related
    ENSP00000490587.1, ENST00000627399.4
  2. NM_001410919.1NP_001397848.1  uncharacterized protein C2orf92 isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC017099
    Consensus CDS
    CCDS92816.1
    UniProtKB/TrEMBL
    A0A1B0GW88

RNA

  1. NR_038386.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA448462, AC017099, AI637498, BC039374, DB066031
    Related
    ENST00000451384.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    97663941..97703066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024453105.2XP_024308873.1  uncharacterized protein C2orf92 isoform X1

  2. XM_024453109.2XP_024308877.1  uncharacterized protein C2orf92 isoform X3

  3. XM_024453106.2XP_024308874.1  uncharacterized protein C2orf92 isoform X2

  4. XM_024453113.2XP_024308881.1  uncharacterized protein C2orf92 isoform X8

  5. XM_024453110.2XP_024308878.1  uncharacterized protein C2orf92 isoform X4

  6. XM_024453111.2XP_024308879.1  uncharacterized protein C2orf92 isoform X5

  7. XM_024453112.2XP_024308880.1  uncharacterized protein C2orf92 isoform X6

    Related
    ENSP00000490827.1, ENST00000599501.6
  8. XM_047445723.1XP_047301679.1  uncharacterized protein C2orf92 isoform X7

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791765.1 Reference GRCh38.p14 PATCHES

    Range
    595744..629097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    98127926..98161282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)