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GUSBP1 GUSB pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 728411, updated on 11-Jun-2021

Summary

Official Symbol
GUSBP1provided by HGNC
Official Full Name
GUSB pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:13670
See related
Ensembl:ENSG00000183666
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 5.6), ovary (RPKM 2.3) and 24 other tissues See more
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Genomic context

See GUSBP1 in Genome Data Viewer
Location:
5p14.3
Exon count:
11
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (21459513..21589372)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (21459622..21589481)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374678 Neighboring gene uncharacterized LOC102723561 Neighboring gene uncharacterized LOC105374685 Neighboring gene uncharacterized LOC105374683 Neighboring gene cadherin 12

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • Putative beta-glucuronidase-like protein MGC87375
  • glucuronidase, beta pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027026.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC091946, AK095656, AK302866, BX109638, DA358891
    Related
    ENST00000607545.5
  2. NR_027027.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' splice pattern, compared to variant 1.
    Source sequence(s)
    AC138951, BC052307, BQ012501, DA358891
    Related
    ENST00000508973.5
  3. NR_027028.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate 3' splice pattern, compared to variant 1. Based on other transcripts from this locus and based on alignment of parent gene transcripts, this pseudogene transcript may be 3' incomplete.
    Source sequence(s)
    AC138951, BC147000, DA358891

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    21459513..21589372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_016107297.1 Reference GRCh38.p13 PATCHES

    Range
    8847..238512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NW_003315917.2 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    639969..645843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_2

Genomic

  1. NT_187651.1 Reference GRCh38.p13 ALT_REF_LOCI_2

    Range
    114942..120811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_008324.1: Suppressed sequence

    Description
    NG_008324.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
  2. NM_207331.2: Suppressed sequence

    Description
    NM_207331.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  3. NR_003656.1: Suppressed sequence

    Description
    NR_003656.1: This RefSeq was permanently suppressed because there is insufficient evidence that this locus is transcribed.
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