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Snhg5 small nucleolar RNA host gene 5 [ Mus musculus (house mouse) ]

Gene ID: 72655, updated on 22-Jan-2023


Official Symbol
Snhg5provided by MGI
Official Full Name
small nucleolar RNA host gene 5provided by MGI
Primary source
See related
Ensembl:ENSMUSG00000097195 AllianceGenome:MGI:1919905
Gene type
RefSeq status
Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mU50HG-b; 2810026P18Rik; 4933428I09Rik
Is expressed in brain; heart; intestine; liver; and lung. Orthologous to human SNHG5 (small nucleolar RNA host gene 5). [provided by Alliance of Genome Resources, Apr 2022]
Broad expression in liver E14 (RPKM 43.1), CNS E11.5 (RPKM 42.6) and 20 other tissues See more
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Genomic context

See Snhg5 in Genome Data Viewer
9; 9 E3.1
Exon count:
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (88403105..88404950, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (88521052..88522897, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene sorting nexin 14 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene synaptotagmin binding, cytoplasmic RNA interacting protein Neighboring gene small nucleolar RNA, C/D box 50A Neighboring gene small nucleolar RNA, C/D box 50B Neighboring gene predicted gene, 22985 Neighboring gene zinc finger protein 949

Genomic regions, transcripts, and products


  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a


GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.


  1. NR_040721.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK012825, BC032970, CT025673

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J


  1. NC_000075.7 Reference GRCm39 C57BL/6J

    88403105..88404950 complement
    GenBank, FASTA, Sequence Viewer (Graphics)