U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Utp14a UTP14A small subunit processome component [ Mus musculus (house mouse) ]

Gene ID: 72554, updated on 11-Apr-2024

Summary

Official Symbol
Utp14aprovided by MGI
Official Full Name
UTP14A small subunit processome componentprovided by MGI
Primary source
MGI:MGI:1919804
See related
Ensembl:ENSMUSG00000063785 AllianceGenome:MGI:1919804
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
JsdX; NY-CO-16; SDCCAG16; mKIAA0266; 2700066J21Rik
Summary
Predicted to be involved in rRNA processing. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in cytosol. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to several human genes including UTP14A (UTP14A small subunit processome component). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 7.3), liver E14 (RPKM 4.3) and 23 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
X A4; X 25.59 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (47345811..47371326)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (48256934..48282450)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 54069 Neighboring gene predicted gene, 24038 Neighboring gene STARR-positive B cell enhancer ABC_E7688 Neighboring gene predicted gene, 39511 Neighboring gene RIKEN cDNA 9530027J09 gene Neighboring gene STARR-positive B cell enhancer mm9_chrX:45637714-45638015 Neighboring gene STARR-seq mESC enhancer starr_47113 Neighboring gene STARR-seq mESC enhancer starr_47114 Neighboring gene STARR-seq mESC enhancer starr_47116 Neighboring gene BCL6 co-repressor-like 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chrX:45782874-45783027 Neighboring gene CapStarr-seq enhancer MGSCv37_chrX:45786781-45786934 Neighboring gene E74 like ETS transcription factor 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • KIAA0266, MGC105191

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
U3 small nucleolar RNA-associated protein 14 homolog A
Names
UTP14, U3 small nucleolar ribonucleoprotein, homolog A
jsd-like X-linked protein
juvenile spermatogonial depletion-like X-linked protein

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028276.1NP_082552.1  U3 small nucleolar RNA-associated protein 14 homolog A

    See identical proteins and their annotated locations for NP_082552.1

    Status: PROVISIONAL

    Source sequence(s)
    AK172924
    Consensus CDS
    CCDS30107.1
    UniProtKB/Swiss-Prot
    A2AFX7, Q640M1, Q6A094, Q6EJB4, Q6P6L1, Q9CZK8
    UniProtKB/TrEMBL
    Q3UYD0
    Related
    ENSMUSP00000079538.5, ENSMUST00000080713.5
    Conserved Domains (1) summary
    pfam04615
    Location:29729
    Utp14; Utp14 protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    47345811..47371326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)