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TRV-AAC1-4 tRNA-Val (anticodon AAC) 1-4 [ Homo sapiens (human) ]

Gene ID: 7239, updated on 10-Oct-2023

Summary

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Official Symbol
TRV-AAC1-4provided by HGNC
Official Full Name
tRNA-Val (anticodon AAC) 1-4provided by HGNC
Primary source
HGNC:HGNC:12353
See related
MIM:189921; AllianceGenome:HGNC:12353
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRV; TRV1; TRNAV1
Summary
There appear to be about 1,300 tRNA genes in the human genome (Hatlen and Attardi, 1971 [PubMed 4929578]). Arnold et al. (1986) [PubMed 3023191] detected a minimum of 13 valine tRNA genes in genomic blots of human DNA.[supplied by OMIM, Sep 2009]
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Genomic context

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See TRV-AAC1-4 in Genome Data Viewer
Location:
5q35.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (181218270..181218342, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (181778222..181778294, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (180645270..180645342, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16790 Neighboring gene tRNA-Ala (anticodon TGC) 3-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23783 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23784 Neighboring gene tRNA-Lys (anticodon CTT) 2-2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23785 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23786 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16791 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16792 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16793 Neighboring gene tRNA-Lys (anticodon CTT) 2-3 Neighboring gene tRNA-Val (anticodon CAC) 1-5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proportion of HeLa cell genome complementary to transfer RNA and 5 s RNA. Hatlen L, et al. J Mol Biol, 1971 Mar 28. PMID 4929578
  2. A human tRNA gene cluster encoding the major and minor valine tRNAs and a lysine tRNA. Craig LC, et al. DNA, 1989 Sep. PMID 2766931
  3. The human tRNAVal gene family: organization, nucleotide sequences and homologous transcription of three single-copy genes. Arnold GJ, et al. Gene, 1986. PMID 3023191
  4. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA valine 1
  • tRNA-Val-AAC-1-4
  • transfer RNA valine 1 (anticodon AAC)
  • transfer RNA-Val (AAC) 1-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    181218270..181218342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    181778222..181778294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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