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PHATRDRAFT_36257 phosphoketolase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7201390, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_36257
Gene description
phosphoketolase
Locus tag
PHATRDRAFT_36257
Gene type
protein coding
RNA name
phosphoketolase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See PHATRDRAFT_36257 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Sequence:
Chromosome: 9; NC_011677.1 (934961..937774)

Chromosome 9 - NC_011677.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011677.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aldehyde-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
phosphoketolase
XP_002180542.1
  • Probable aldehyde lyase catalyses D-Ribulose 5-phosphate+Formaldehyde <=> D-arabino-6-Hexulose 3-phosphate

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011677.1 Reference assembly

    Range
    934961..937774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002180506.1 → XP_002180542.1  phosphoketolase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002180542.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G0U4
    Conserved Domains (4) summary
    PRK05261
    Location:24 → 834
    PRK05261; putative phosphoketolase; Provisional
    pfam03894
    Location:412 → 614
    XFP; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
    pfam09363
    Location:625 → 828
    XFP_C; XFP C-terminal domain
    cl01629
    Location:24 → 395
    TPP_enzymes; Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and ...
Nucleotide Protein
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