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1700003E16Rik RIKEN cDNA 1700003E16 gene [ Mus musculus (house mouse) ]

Gene ID: 71837, updated on 5-Mar-2024

Summary

Official Symbol
1700003E16Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700003E16 geneprovided by MGI
Primary source
MGI:MGI:1919087
See related
Ensembl:ENSMUSG00000030030 AllianceGenome:MGI:1919087
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in choroid invagination; metencephalon part of 4th ventricle choroid plexus; olfactory epithelium; and palatal shelf epithelium. Orthologous to human C2orf81 (chromosome 2 open reading frame 81). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 260.7) and cortex adult (RPKM 6.8) See more
Orthologs
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Genomic context

Location:
6 C3; 6 35.94 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (83133386..83139957)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (83156404..83162975)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene rhotekin Neighboring gene STARR-positive B cell enhancer ABC_E6447 Neighboring gene WD repeat domain 54 Neighboring gene STARR-seq mESC enhancer starr_16458 Neighboring gene predicted gene 15624 Neighboring gene dynactin 1 Neighboring gene solute carrier family 4, sodium bicarbonate cotransporter, member 5 Neighboring gene STARR-seq mESC enhancer starr_16459

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Clone Names

  • MGC143552

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C2orf81 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027948.1NP_082224.1  uncharacterized protein C2orf81 homolog

    See identical proteins and their annotated locations for NP_082224.1

    Status: VALIDATED

    Source sequence(s)
    AK005628, BB429769, BC126949, BF452482, BY253424, CK137463
    Consensus CDS
    CCDS51818.1
    UniProtKB/Swiss-Prot
    A0JNU0, Q9DAQ4
    Related
    ENSMUSP00000032106.5, ENSMUST00000032106.6
    Conserved Domains (2) summary
    pfam15479
    Location:6571
    DUF4639; Domain of unknown function (DUF4639)
    cl22861
    Location:436463
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    83133386..83139957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)