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5530401A14Rik RIKEN cDNA 5530401A14 gene [ Mus musculus (house mouse) ]

Gene ID: 71388, updated on 24-Sep-2025
Official Symbol
5530401A14Rikprovided by MGI
Official Full Name
RIKEN cDNA 5530401A14 geneprovided by MGI
Primary source
MGI:MGI:1918638
See related
Ensembl:ENSMUSG00000020703 AllianceGenome:MGI:1918638
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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See 5530401A14Rik in Genome Data Viewer
Location:
11 B5; 11 49.61 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (81751503..81785408)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (81860677..81894582)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene acid-sensing ion channel 2 Neighboring gene RIKEN cDNA 1700071K01 gene Neighboring gene predicted gene 11418 Neighboring gene STARR-seq mESC enhancer starr_30167 Neighboring gene STARR-seq mESC enhancer starr_30168 Neighboring gene STARR-seq mESC enhancer starr_30169 Neighboring gene predicted gene, 46254 Neighboring gene STARR-seq mESC enhancer starr_30170 Neighboring gene predicted gene 11419 Neighboring gene predicted gene, 31522 Neighboring gene C-C motif chemokine ligand 2

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Markers

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038010.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK017430, AL626807, BB613856
    Related
    ENSMUST00000021044.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    81751503..81785408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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