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Fra10ac1 FRA10A associated CGG repeat 1 [ Mus musculus (house mouse) ]

Gene ID: 70567, updated on 12-May-2024

Summary

Official Symbol
Fra10ac1provided by MGI
Official Full Name
FRA10A associated CGG repeat 1provided by MGI
Primary source
MGI:MGI:1917817
See related
Ensembl:ENSMUSG00000054237 AllianceGenome:MGI:1917817
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5730455O13Rik
Summary
Predicted to enable phosphatase activity. Predicted to be involved in dephosphorylation. Predicted to be located in nucleus. Orthologous to human FRA10AC1 (FRA10A associated CGG repeat 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 10.1), CNS E14 (RPKM 7.3) and 27 other tissues See more
Orthologs
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Genomic context

See Fra10ac1 in Genome Data Viewer
Location:
19 C2; 19 32.82 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (38176925..38213078, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (38188477..38224630, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32440 Neighboring gene phosphodiesterase 6C, cGMP specific, cone, alpha prime Neighboring gene predicted gene, 52398 Neighboring gene STARR-seq mESC enhancer starr_46076 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:38298641-38298824 Neighboring gene STARR-seq mESC enhancer starr_46077 Neighboring gene STARR-seq mESC enhancer starr_46079 Neighboring gene predicted gene, 32574 Neighboring gene predicted gene, 32491 Neighboring gene predicted gene, 32771 Neighboring gene leucine-rich repeat LGI family, member 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in dephosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in mRNA splicing, via spliceosome ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
protein FRA10AC1 homolog
Names
FRA10AC1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081075.2NP_001074544.1  protein FRA10AC1 homolog isoform 1

    See identical proteins and their annotated locations for NP_001074544.1

    Status: VALIDATED

    Source sequence(s)
    AC112153
    Consensus CDS
    CCDS37972.1
    UniProtKB/Swiss-Prot
    F8VPM5, Q1LZ54, Q3T9W6, Q8BP78
    Related
    ENSMUSP00000070534.6, ENSMUST00000067167.6
    Conserved Domains (1) summary
    pfam09725
    Location:104216
    Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1
  2. NM_027466.1NP_081742.1  protein FRA10AC1 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC112153, AK017666, BB669528
    Related
    ENSMUST00000238007.2
    Conserved Domains (1) summary
    pfam09725
    Location:104208
    Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    38176925..38213078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006527335.4XP_006527398.1  protein FRA10AC1 homolog isoform X2

    See identical proteins and their annotated locations for XP_006527398.1

    UniProtKB/Swiss-Prot
    F8VPM5, Q1LZ54, Q3T9W6, Q8BP78
    Conserved Domains (1) summary
    pfam09725
    Location:104216
    Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1
  2. XM_006527334.3XP_006527397.1  protein FRA10AC1 homolog isoform X2

    See identical proteins and their annotated locations for XP_006527397.1

    UniProtKB/Swiss-Prot
    F8VPM5, Q1LZ54, Q3T9W6, Q8BP78
    Conserved Domains (1) summary
    pfam09725
    Location:104216
    Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1
  3. XM_017318291.2XP_017173780.1  protein FRA10AC1 homolog isoform X1

    Conserved Domains (1) summary
    pfam09725
    Location:193305
    Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1