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1810019D21Rik RIKEN cDNA 1810019D21 gene [ Mus musculus (house mouse) ]

Gene ID: 69771, updated on 8-Feb-2024

Summary

Official Symbol
1810019D21Rikprovided by MGI
Official Full Name
RIKEN cDNA 1810019D21 geneprovided by MGI
Primary source
MGI:MGI:1917021
See related
Ensembl:ENSMUSG00000086390 AllianceGenome:MGI:1917021
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Esrp2-as
Expression
Biased expression in bladder adult (RPKM 49.8), stomach adult (RPKM 22.3) and 14 other tissues See more
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Genomic context

See 1810019D21Rik in Genome Data Viewer
Location:
8 D3; 8 53.1 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (106862032..106865355)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (106135400..106138723)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene DEAD box helicase 28 Neighboring gene dihydrouridine synthase 2 Neighboring gene STARR-positive B cell enhancer ABC_E1375 Neighboring gene STARR-positive B cell enhancer ABC_E3801 Neighboring gene nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:108636517-108636718 Neighboring gene STARR-positive B cell enhancer ABC_E9739 Neighboring gene epithelial splicing regulatory protein 2 Neighboring gene STARR-positive B cell enhancer mm9_chr8:108674075-108674376 Neighboring gene phospholipase A2, group XV Neighboring gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040344.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC133195
    Related
    ENSMUST00000244965.1
  2. NR_040345.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AC133195
    Related
    ENSMUST00000137995.9
  3. NR_040346.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site in the 5' region and lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AC133195
    Related
    ENSMUST00000140509.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    106862032..106865355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)