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Sec24d SEC24 homolog D, COPII coat complex component [ Mus musculus (house mouse) ]

Gene ID: 69608, updated on 2-Nov-2024

Summary

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Official Symbol
Sec24dprovided by MGI
Official Full Name
SEC24 homolog D, COPII coat complex componentprovided by MGI
Primary source
MGI:MGI:1916858
See related
Ensembl:ENSMUSG00000039234 AllianceGenome:MGI:1916858
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1349; 2310020L09Rik
Summary
Predicted to enable SNARE binding activity and zinc ion binding activity. Acts upstream of or within in utero embryonic development. Predicted to be located in intracellular membrane-bounded organelle. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Is expressed in several structures, including cerebral cortex. Human ortholog(s) of this gene implicated in Cole-Carpenter syndrome. Orthologous to human SEC24D (SEC24 homolog D, COPII coat complex component). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in adrenal adult (RPKM 64.8), duodenum adult (RPKM 50.4) and 24 other tissues See more
Orthologs
human all
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Genomic context

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See Sec24d in Genome Data Viewer
Location:
3 G1; 3 53.82 cM
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (123058451..123159290)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (123264801..123365641)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene myozenin 2 Neighboring gene STARR-seq mESC enhancer starr_08901 Neighboring gene predicted gene, 54182 Neighboring gene synaptopodin 2 Neighboring gene STARR-seq mESC enhancer starr_08902 Neighboring gene STARR-positive B cell enhancer ABC_E10211 Neighboring gene STARR-seq mESC enhancer starr_08903 Neighboring gene STARR-seq mESC enhancer starr_08904 Neighboring gene STARR-positive B cell enhancer mm9_chr3:123076377-123076678 Neighboring gene STARR-positive B cell enhancer mm9_chr3:123088670-123088971 Neighboring gene methyltransferase 14, N6-adenosine-methyltransferase subunit Neighboring gene predicted gene, 22713

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Disruption of the Sec24d gene results in early embryonic lethality in the mouse. Baines AC, et al. PLoS One, 2013. PMID 23596517, Free PMC Article
  2. Murine SEC24D can substitute functionally for SEC24C during embryonic development. Adams EJ, et al. Sci Rep, 2021 Oct 26. PMID 34702932, Free PMC Article
  3. Mammalian COPII coat component SEC24C is required for embryonic development in mice. Adams EJ, et al. J Biol Chem, 2014 Jul 25. PMID 24876386, Free PMC Article
  4. SEC24A deficiency lowers plasma cholesterol through reduced PCSK9 secretion. Chen XW, et al. Elife, 2013 Apr 9. PMID 23580231, Free PMC Article
  5. Planar cell polarity defects and defective Vangl2 trafficking in mutants for the COPII gene Sec24b. Wansleeben C, et al. Development, 2010 Apr. PMID 20215345

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Murine SEC24D can substitute functionally for SEC24C during embryonic development.
    Title: Murine SEC24D can substitute functionally for SEC24C during embryonic development.
  2. SEC24D is absolutely required for early embryonic development in the mouse, with complete deficiency resulting in uniform loss prior to the blastocyst stage.
    Title: Disruption of the Sec24d gene results in early embryonic lethality in the mouse.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Gene trapped (2) 
  • Targeted (3) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables SNARE binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables SNARE binding ISO
Inferred from Sequence Orthology
more info
  
enables zinc ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables zinc ion binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in COPII-coated vesicle cargo loading IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in COPII-coated vesicle cargo loading ISO
Inferred from Sequence Orthology
more info
  
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within in utero embryonic development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of COPII vesicle coat ISO
Inferred from Sequence Orthology
more info
  
is_active_in endoplasmic reticulum exit site IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
protein transport protein Sec24D
Names
Sec24 related gene family, member D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027135.2 → NP_081411.2  protein transport protein Sec24D

    See identical proteins and their annotated locations for NP_081411.2

    Status: VALIDATED

    Source sequence(s)
    BC067020
    Consensus CDS
    CCDS38621.1
    UniProtKB/TrEMBL
    Q6NXL1
    Related
    ENSMUSP00000035823.8, ENSMUST00000047923.12
    Conserved Domains (1) summary
    COG5028
    Location:116 → 1027
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    123058451..123159290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030252809.2 → XP_030108669.1  protein transport protein Sec24D isoform X1

    UniProtKB/TrEMBL
    Q6NXL1
    Conserved Domains (1) summary
    COG5028
    Location:116 → 1027
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  2. XM_030252810.2 → XP_030108670.1  protein transport protein Sec24D isoform X1

    UniProtKB/TrEMBL
    Q6NXL1
    Conserved Domains (1) summary
    COG5028
    Location:116 → 1027
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  3. XM_036163297.1 → XP_036019190.1  protein transport protein Sec24D isoform X1

    UniProtKB/TrEMBL
    Q6NXL1
    Conserved Domains (1) summary
    COG5028
    Location:116 → 1027
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  4. XM_006502038.4 → XP_006502101.1  protein transport protein Sec24D isoform X1

    See identical proteins and their annotated locations for XP_006502101.1

    UniProtKB/TrEMBL
    Q6NXL1
    Conserved Domains (1) summary
    COG5028
    Location:116 → 1027
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Nucleotide Protein Strain
Heading Accession and Version

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