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Sec24d SEC24 homolog D, COPII coat complex component [ Mus musculus (house mouse) ]

Gene ID: 69608, updated on 8-Feb-2024

Summary

Official Symbol
Sec24dprovided by MGI
Official Full Name
SEC24 homolog D, COPII coat complex componentprovided by MGI
Primary source
MGI:MGI:1916858
See related
Ensembl:ENSMUSG00000039234 AllianceGenome:MGI:1916858
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1349; 2310020L09Rik
Summary
Predicted to enable SNARE binding activity and zinc ion binding activity. Acts upstream of or within in utero embryonic development. Predicted to be located in intracellular membrane-bounded organelle. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Is expressed in cerebral cortex; cerebral cortex marginal layer; and embryo. Human ortholog(s) of this gene implicated in Cole-Carpenter syndrome. Orthologous to human SEC24D (SEC24 homolog D, COPII coat complex component). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in adrenal adult (RPKM 64.8), duodenum adult (RPKM 50.4) and 24 other tissues See more
Orthologs
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Genomic context

See Sec24d in Genome Data Viewer
Location:
3 G1; 3 53.82 cM
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (123058451..123159290)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (123264801..123365641)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene myozenin 2 Neighboring gene STARR-seq mESC enhancer starr_08901 Neighboring gene predicted gene, 54182 Neighboring gene synaptopodin 2 Neighboring gene STARR-seq mESC enhancer starr_08902 Neighboring gene STARR-positive B cell enhancer ABC_E10211 Neighboring gene STARR-seq mESC enhancer starr_08903 Neighboring gene STARR-seq mESC enhancer starr_08904 Neighboring gene STARR-positive B cell enhancer mm9_chr3:123076377-123076678 Neighboring gene STARR-positive B cell enhancer mm9_chr3:123088670-123088971 Neighboring gene methyltransferase 14, N6-adenosine-methyltransferase subunit Neighboring gene predicted gene, 22713

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (2) 
  • Targeted (3) 
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables SNARE binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables SNARE binding ISO
Inferred from Sequence Orthology
more info
 
enables zinc ion binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables zinc ion binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in COPII-coated vesicle cargo loading IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in COPII-coated vesicle cargo loading ISO
Inferred from Sequence Orthology
more info
 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within in utero embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of COPII vesicle coat ISO
Inferred from Sequence Orthology
more info
 
is_active_in endoplasmic reticulum exit site IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
protein transport protein Sec24D
Names
Sec24 related gene family, member D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027135.2NP_081411.2  protein transport protein Sec24D

    See identical proteins and their annotated locations for NP_081411.2

    Status: VALIDATED

    Source sequence(s)
    BC067020
    Consensus CDS
    CCDS38621.1
    UniProtKB/TrEMBL
    Q6NXL1
    Related
    ENSMUSP00000035823.8, ENSMUST00000047923.12
    Conserved Domains (1) summary
    COG5028
    Location:1161027
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    123058451..123159290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030252809.2XP_030108669.1  protein transport protein Sec24D isoform X1

    UniProtKB/TrEMBL
    Q6NXL1
    Conserved Domains (1) summary
    COG5028
    Location:1161027
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
  2. XM_030252810.2XP_030108670.1  protein transport protein Sec24D isoform X1

    UniProtKB/TrEMBL
    Q6NXL1
    Conserved Domains (1) summary
    COG5028
    Location:1161027
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
  3. XM_036163297.1XP_036019190.1  protein transport protein Sec24D isoform X1

    UniProtKB/TrEMBL
    Q6NXL1
    Conserved Domains (1) summary
    COG5028
    Location:1161027
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
  4. XM_006502038.4XP_006502101.1  protein transport protein Sec24D isoform X1

    See identical proteins and their annotated locations for XP_006502101.1

    UniProtKB/TrEMBL
    Q6NXL1
    Conserved Domains (1) summary
    COG5028
    Location:1161027
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]