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SNORD12 small nucleolar RNA, C/D box 12 [ Homo sapiens (human) ]

Gene ID: 692057, updated on 2-Nov-2024

Summary

Official Symbol
SNORD12provided by HGNC
Official Full Name
small nucleolar RNA, C/D box 12provided by HGNC
Primary source
HGNC:HGNC:32708
See related
Ensembl:ENSG00000212304 AllianceGenome:HGNC:32708
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HBII-99; MIR1259; MIRN1259
Summary
Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See SNORD12 in Genome Data Viewer
Location:
20q13.13
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (49280683..49280772)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (51050181..51050270)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (47897220..47897309)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr20:47900044-47900976 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:47902841-47903772 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:47903773-47904704 Neighboring gene small nucleolar RNA, C/D box 12C Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18059 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18060 Neighboring gene small nucleolar RNA, C/D box 12B Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:47909763-47910696 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:47910697-47911630 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:47911631-47912563 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:47913664-47914226 Neighboring gene ZNFX1 antisense RNA 1 Neighboring gene uncharacterized LOC124904925 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47934991-47935572 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47935573-47936154 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:47940265-47940766 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:47940767-47941266 Neighboring gene uncharacterized LOC105372649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18061 Neighboring gene NANOG hESC enhancer GRCh37_chr20:47985158-47985711 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:47990213-47990475 Neighboring gene potassium voltage-gated channel subfamily B member 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:48040793-48041316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:48041317-48041840

Genomic regions, transcripts, and products

General gene information

Other Names

  • hsa-mir-1259
  • microRNA 1259

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003030.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL049766
    Related
    ENST00000391002.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    49280683..49280772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    51050181..51050270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)