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Zfas1 zinc finger, NFX1-type containing 1, antisense RNA 1 [ Mus musculus (house mouse) ]

Gene ID: 68949, updated on 30-Oct-2022

Summary

Official Symbol
Zfas1provided by MGI
Official Full Name
zinc finger, NFX1-type containing 1, antisense RNA 1provided by MGI
Primary source
MGI:MGI:1916199
See related
Ensembl:ENSMUSG00000074578 AllianceGenome:MGI:1916199
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Zfos1; 1500012F01Rik
Summary
Acts upstream of or within mammary gland epithelial cell differentiation and negative regulation of mammary gland epithelial cell proliferation. Orthologous to human ZFAS1 (ZNFX1 antisense RNA 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in liver E14 (RPKM 58.5), CNS E11.5 (RPKM 52.7) and 25 other tissues See more
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Genomic context

See Zfas1 in Genome Data Viewer
Location:
2; 2 H3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (166904854..166907782)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (167062934..167065862)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene GLE1 RNA export mediator pseudogene Neighboring gene DEAD box helicase 27 Neighboring gene zinc finger, NFX1-type containing 1 Neighboring gene predicted gene, 25878 Neighboring gene predicted gene, 23201 Neighboring gene small nucleolar RNA, C/D box 12 Neighboring gene predicted gene, 39984 Neighboring gene ribosomal protein L17 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • zinc finger, NFX1-type containing 1, opposite strand RNA 1

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables transmembrane transporter binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cardiac muscle contraction IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within cardiac muscle contraction IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within mammary gland epithelial cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of ATPase-coupled calcium transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within negative regulation of ATPase-coupled calcium transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of calcium ion transmembrane transport IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within negative regulation of calcium ion transmembrane transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of calcium-dependent ATPase activity IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within negative regulation of mammary gland epithelial cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of cardiac muscle cell apoptotic process IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within positive regulation of cardiac muscle cell apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within regulation of hypoxia-induced intrinsic apoptotic signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in sarcoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in sarcoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_138563.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI847202, AK005231, BF467288
    Related
    ENSMUST00000189909.8

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    166904854..166907782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001081005.1: Suppressed sequence

    Description
    NM_001081005.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.