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Ptcd2 pentatricopeptide repeat domain 2 [ Mus musculus (house mouse) ]

Gene ID: 68927, updated on 5-Mar-2024

Summary

Official Symbol
Ptcd2provided by MGI
Official Full Name
pentatricopeptide repeat domain 2provided by MGI
Primary source
MGI:MGI:1916177
See related
Ensembl:ENSMUSG00000021650 AllianceGenome:MGI:1916177
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1190005P08Rik
Summary
Acts upstream of or within several processes, including animal organ development; muscle cell development; and regulation of mRNA processing. Located in mitochondrion. Is expressed in central nervous system and sensory organ. Orthologous to human PTCD2 (pentatricopeptide repeat domain 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in heart adult (RPKM 13.1), CNS E18 (RPKM 11.0) and 28 other tissues See more
Orthologs
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Genomic context

See Ptcd2 in Genome Data Viewer
Location:
13 D1; 13 52.76 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (99456157..99481215, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (99319649..99344678, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41036 Neighboring gene zinc finger protein 366 Neighboring gene STARR-seq mESC enhancer starr_35452 Neighboring gene STARR-seq mESC enhancer starr_35453 Neighboring gene STARR-seq mESC enhancer starr_35456 Neighboring gene STARR-positive B cell enhancer mm9_chr13:100123104-100123405 Neighboring gene mitochondrial ribosomal protein S27 Neighboring gene RIKEN cDNA 6430562O15 gene Neighboring gene microtubule-associated protein 1B Neighboring gene STARR-seq mESC enhancer starr_35459

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1)  1 citation
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
pentatricopeptide repeat-containing protein 2, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026873.2NP_081149.1  pentatricopeptide repeat-containing protein 2, mitochondrial

    See identical proteins and their annotated locations for NP_081149.1

    Status: PROVISIONAL

    Source sequence(s)
    AC132347
    Consensus CDS
    CCDS26721.1
    UniProtKB/Swiss-Prot
    Q8R3K3, Q91VG3, Q9D0S7
    Related
    ENSMUSP00000022153.7, ENSMUST00000022153.8
    Conserved Domains (2) summary
    sd00004
    Location:130152
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:157203
    PPR_2; PPR repeat family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    99456157..99481215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036158153.1XP_036014046.1  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X1

    Conserved Domains (2) summary
    sd00004
    Location:130152
    PPR; PPR repeat [structural motif]
    pfam10037
    Location:128205
    MRP-S27; Mitochondrial 28S ribosomal protein S27