U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gkn3 gastrokine 3 [ Mus musculus (house mouse) ]

Gene ID: 68888, updated on 20-Apr-2024

Summary

Official Symbol
Gkn3provided by MGI
Official Full Name
gastrokine 3provided by MGI
Primary source
MGI:MGI:1916138
See related
Ensembl:ENSMUSG00000030048 AllianceGenome:MGI:1916138
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1190003M12Rik
Summary
Acts upstream of or within negative regulation of epithelial cell proliferation. Located in extracellular space. Orthologous to human GKN3P (gastrokine 3, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in duodenum adult (RPKM 1482.7), small intestine adult (RPKM 573.7) and 1 other tissue See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
6 D1; 6 37.96 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (87360301..87365917, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (87383319..87388935, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene gastrokine 1 Neighboring gene gastrokine 2 Neighboring gene bone morphogenetic protein 10 Neighboring gene Rho GTPase activating protein 25 Neighboring gene STARR-positive B cell enhancer ABC_E861 Neighboring gene STARR-positive B cell enhancer ABC_E4843 Neighboring gene STARR-positive B cell enhancer ABC_E3663

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026860.1NP_081136.1  gastrokine-3 precursor

    See identical proteins and their annotated locations for NP_081136.1

    Status: PROVISIONAL

    Source sequence(s)
    BC116955
    Consensus CDS
    CCDS20320.1
    UniProtKB/Swiss-Prot
    Q9D0T7
    Related
    ENSMUSP00000032127.5, ENSMUST00000032127.6
    Conserved Domains (1) summary
    pfam04089
    Location:68154
    BRICHOS; BRICHOS domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    87360301..87365917 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)