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Gucd1 guanylyl cyclase domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 68778, updated on 31-Jan-2019

Summary

Official Symbol
Gucd1provided by MGI
Official Full Name
guanylyl cyclase domain containing 1provided by MGI
Primary source
MGI:MGI:1916028
See related
Ensembl:ENSMUSG00000033416
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110038D17Rik
Expression
Ubiquitous expression in small intestine adult (RPKM 37.8), duodenum adult (RPKM 36.7) and 28 other tissues See more
Orthologs

Genomic context

See Gucd1 in Genome Data Viewer
Location:
10; 10 C1
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (75506814..75517967, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (74969559..74980067, complement)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene ureidopropionase, beta Neighboring gene RIKEN cDNA 4933407G14 gene Neighboring gene small nuclear ribonucleoprotein D3 Neighboring gene predicted gene, 35061 Neighboring gene leucine rich repeat containing 75B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
protein GUCD1
Names
guanylyl cyclase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347201.1NP_001334130.1  protein GUCD1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
    Source sequence(s)
    AC144461, AK034509, BE952992
    Consensus CDS
    CCDS83713.1
    UniProtKB/Swiss-Prot
    Q8BZI6
    UniProtKB/TrEMBL
    Q05CJ4
  2. NM_175133.2NP_780342.1  protein GUCD1 isoform 1

    See identical proteins and their annotated locations for NP_780342.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC144461, AK034509, AK040832, BE952992
    Consensus CDS
    CCDS35936.1
    UniProtKB/Swiss-Prot
    Q8BZI6
    Related
    ENSMUSP00000043000.7, ENSMUST00000039796.13
    Conserved Domains (1) summary
    pfam09778
    Location:22235
    Guanylate_cyc_2; Guanylylate cyclase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

    Range
    75506814..75517967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006514036.1XP_006514099.1  protein GUCD1 isoform X1

    Related
    ENSMUSP00000113976.1, ENSMUST00000118936.7
    Conserved Domains (1) summary
    pfam09778
    Location:1196
    Guanylate_cyc_2; Guanylylate cyclase
  2. XM_006514034.3XP_006514097.2  protein GUCD1 isoform X1

    UniProtKB/TrEMBL
    Q05CJ4
    Conserved Domains (1) summary
    pfam09778
    Location:1196
    Guanylate_cyc_2; Guanylylate cyclase
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