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Ms4a6d membrane-spanning 4-domains, subfamily A, member 6D [ Mus musculus (house mouse) ]

Gene ID: 68774, updated on 5-Apr-2024

Summary

Official Symbol
Ms4a6dprovided by MGI
Official Full Name
membrane-spanning 4-domains, subfamily A, member 6Dprovided by MGI
Primary source
MGI:MGI:1916024
See related
Ensembl:ENSMUSG00000024679 AllianceGenome:MGI:1916024
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ms4a11; 1110058E16Rik
Summary
Predicted to be located in trans-Golgi network. Orthologous to several human genes including MS4A6A (membrane spanning 4-domains A6A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in liver E18 (RPKM 3.4), mammary gland adult (RPKM 2.2) and 27 other tissues See more
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Genomic context

See Ms4a6d in Genome Data Viewer
Location:
19 A; 19 8.45 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11563970..11582150, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11586606..11604804, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene membrane-spanning 4-domains, subfamily A, member 4D Neighboring gene membrane-spanning 4-domains subfamily A member 6D-like Neighboring gene STARR-positive B cell enhancer ABC_E7635 Neighboring gene STARR-seq mESC enhancer starr_45572 Neighboring gene predicted gene, 24599 Neighboring gene membrane-spanning 4-domains, subfamily A, member 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in trans-Golgi network ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
membrane-spanning 4-domains subfamily A member 6D
Names
CD20 antigen-like 8
membrane-spanning 4-domains, subfamily A, member 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026835.3NP_081111.1  membrane-spanning 4-domains subfamily A member 6D

    See identical proteins and their annotated locations for NP_081111.1

    Status: VALIDATED

    Source sequence(s)
    AC165168
    Consensus CDS
    CCDS29603.1
    UniProtKB/Swiss-Prot
    Q99N07, Q9D0X1, Q9EQY7
    UniProtKB/TrEMBL
    Q2TVW7
    Related
    ENSMUSP00000025582.5, ENSMUST00000025582.11
    Conserved Domains (1) summary
    pfam04103
    Location:47207
    CD20; CD20-like family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    11563970..11582150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)