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Pcyt2 phosphate cytidylyltransferase 2, ethanolamine [ Mus musculus (house mouse) ]

Gene ID: 68671, updated on 12-May-2024

Summary

Official Symbol
Pcyt2provided by MGI
Official Full Name
phosphate cytidylyltransferase 2, ethanolamineprovided by MGI
Primary source
MGI:MGI:1915921
See related
Ensembl:ENSMUSG00000025137 AllianceGenome:MGI:1915921
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ET; 1110033E03Rik
Summary
Enables ethanolamine-phosphate cytidylyltransferase activity. Involved in phosphatidylethanolamine biosynthetic process. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human PCYT2 (phosphate cytidylyltransferase 2, ethanolamine). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in liver adult (RPKM 301.0), duodenum adult (RPKM 190.6) and 28 other tissues See more
Orthologs
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Genomic context

See Pcyt2 in Genome Data Viewer
Location:
11 E2; 11 84.33 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (120500888..120508784, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (120610062..120617947, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene Aly/REF export factor Neighboring gene STARR-positive B cell enhancer ABC_E1854 Neighboring gene anaphase promoting complex subunit 11 Neighboring gene neuropeptide B Neighboring gene STARR-positive B cell enhancer ABC_E7114 Neighboring gene sirtuin 7 Neighboring gene microRNA 6936 Neighboring gene STARR-positive B cell enhancer ABC_E7115 Neighboring gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian) Neighboring gene predicted gene, 17586

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (2)  1 citation

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 
enables ethanolamine-phosphate cytidylyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ethanolamine-phosphate cytidylyltransferase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables ethanolamine-phosphate cytidylyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
enables nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in phosphatidylethanolamine biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in phosphatidylethanolamine biosynthetic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in phosphatidylethanolamine biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within phospholipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
ethanolamine-phosphate cytidylyltransferase
Names
CTP:phosphoethanolamine cytidylyltransferase
phosphorylethanolamine transferase
NP_001334544.1
NP_001349930.1
NP_077191.2
XP_006534132.1
XP_006534134.1
XP_036012825.1
XP_036012826.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347615.2NP_001334544.1  ethanolamine-phosphate cytidylyltransferase isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL663030
    Consensus CDS
    CCDS83946.1
    UniProtKB/TrEMBL
    A2ABY3, Q3TLU0
    Related
    ENSMUSP00000101794.4, ENSMUST00000106188.4
  2. NM_001363001.1NP_001349930.1  ethanolamine-phosphate cytidylyltransferase isoform 3

    Status: VALIDATED

    Source sequence(s)
    AK144544, AL663030
    UniProtKB/TrEMBL
    Q540F5
    Conserved Domains (1) summary
    cl28626
    Location:15345
    PLN02406; ethanolamine-phosphate cytidylyltransferase
  3. NM_024229.3NP_077191.2  ethanolamine-phosphate cytidylyltransferase isoform 1

    See identical proteins and their annotated locations for NP_077191.2

    Status: VALIDATED

    Source sequence(s)
    AK140458, AL663030
    Consensus CDS
    CCDS25747.1
    UniProtKB/Swiss-Prot
    Q922E4, Q99J50
    UniProtKB/TrEMBL
    Q3USD5, Q540F5
    Related
    ENSMUSP00000026129.10, ENSMUST00000026129.16
    Conserved Domains (3) summary
    PTZ00308
    Location:15390
    PTZ00308; ethanolamine-phosphate cytidylyltransferase; Provisional
    cd02173
    Location:230382
    ECT; CTP:phosphoethanolamine cytidylyltransferase (ECT)
    cd02174
    Location:21163
    CCT; CTP:phosphocholine cytidylyltransferase

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    120500888..120508784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036156933.1XP_036012826.1  ethanolamine-phosphate cytidylyltransferase isoform X4

    UniProtKB/TrEMBL
    Q3TLU0
    Conserved Domains (1) summary
    PTZ00308
    Location:15318
    PTZ00308; ethanolamine-phosphate cytidylyltransferase; Provisional
  2. XM_036156932.1XP_036012825.1  ethanolamine-phosphate cytidylyltransferase isoform X3

    UniProtKB/TrEMBL
    Q540F5
    Conserved Domains (1) summary
    PTZ00308
    Location:15336
    PTZ00308; ethanolamine-phosphate cytidylyltransferase; Provisional
  3. XM_006534071.3XP_006534134.1  ethanolamine-phosphate cytidylyltransferase isoform X2

    UniProtKB/TrEMBL
    Q3TLU0
    Conserved Domains (1) summary
    PTZ00308
    Location:15371
    PTZ00308; ethanolamine-phosphate cytidylyltransferase; Provisional
  4. XM_006534069.3XP_006534132.1  ethanolamine-phosphate cytidylyltransferase isoform X1

    UniProtKB/TrEMBL
    Q540F5
    Conserved Domains (1) summary
    PTZ00308
    Location:15389
    PTZ00308; ethanolamine-phosphate cytidylyltransferase; Provisional

RNA

  1. XR_001780048.2 RNA Sequence

  2. XR_004937013.1 RNA Sequence

  3. XR_003949495.2 RNA Sequence

  4. XR_879733.4 RNA Sequence