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Vps51 VPS51 GARP complex subunit [ Mus musculus (house mouse) ]

Gene ID: 68505, updated on 16-Apr-2019

Summary

Official Symbol
Vps51provided by MGI
Official Full Name
VPS51 GARP complex subunitprovided by MGI
Primary source
MGI:MGI:1915755
See related
Ensembl:ENSMUSG00000024797
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ffr; AI837850; 1110014N23Rik; 3110057M17Rik
Expression
Ubiquitous expression in ovary adult (RPKM 36.2), colon adult (RPKM 29.9) and 28 other tissues See more
Orthologs

Genomic context

See Vps51 in Genome Data Viewer
Location:
19; 19 A
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (6067842..6077187, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (6067842..6077187, complement)

Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) Neighboring gene zinc finger, HIT domain containing 2 Neighboring gene transmembrane 7 superfamily member 2 Neighboring gene transmembrane protein 262 Neighboring gene zinc finger like protein 1 Neighboring gene cell division cycle associated 5

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi vesicle transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
autophagy ISO
Inferred from Sequence Orthology
more info
 
endocytic recycling IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endocytic recycling ISO
Inferred from Sequence Orthology
more info
 
lysosomal transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
lysosomal transport ISO
Inferred from Sequence Orthology
more info
PubMed 
retrograde transport, endosome to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
retrograde transport, endosome to Golgi ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
EARP complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
EARP complex ISO
Inferred from Sequence Orthology
more info
PubMed 
GARP complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
GARP complex ISO
Inferred from Sequence Orthology
more info
PubMed 
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
recycling endosome ISO
Inferred from Sequence Orthology
more info
PubMed 
trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
trans-Golgi network ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
vacuolar protein sorting-associated protein 51 homolog
Names
protein fat-free homolog
vacuolar protein sorting 51 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081041.1NP_001074510.1  vacuolar protein sorting-associated protein 51 homolog

    See identical proteins and their annotated locations for NP_001074510.1

    Status: PROVISIONAL

    Source sequence(s)
    AC131692
    Consensus CDS
    CCDS37894.1
    UniProtKB/Swiss-Prot
    Q3UVL4
    Related
    ENSMUSP00000025711.5, ENSMUST00000025711.12
    Conserved Domains (2) summary
    pfam08700
    Location:63147
    Vps51; Vps51/Vps67
    cl19297
    Location:101262
    Dor1; Dor1-like family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

    Range
    6067842..6077187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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