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Fam229a family with sequence similarity 229, member A [ Mus musculus (house mouse) ]

Gene ID: 68233, updated on 5-Mar-2024

Summary

Official Symbol
Fam229aprovided by MGI
Official Full Name
family with sequence similarity 229, member Aprovided by MGI
Primary source
MGI:MGI:1915483
See related
Ensembl:ENSMUSG00000078554 AllianceGenome:MGI:1915483
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700125D06Rik
Summary
Orthologous to human FAM229A (family with sequence similarity 229 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 328.9) See more
Orthologs
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Genomic context

Location:
4 D2.2; 4 63.26 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (129384983..129385749)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (129491190..129491956)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:129138525-129138708 Neighboring gene predicted gene, 24621 Neighboring gene BSD domain containing 1 Neighboring gene testis-specific serine kinase 3 Neighboring gene STARR-positive B cell enhancer ABC_E6223 Neighboring gene STARR-seq mESC enhancer starr_11499 Neighboring gene MARCKS-like 1 Neighboring gene histone deacetylase 1 Neighboring gene STARR-positive B cell enhancer ABC_E1039

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085491.2NP_001078960.1  protein FAM229A

    See identical proteins and their annotated locations for NP_001078960.1

    Status: VALIDATED

    Source sequence(s)
    AK018987, BY707048, CA465983
    Consensus CDS
    CCDS38885.1
    UniProtKB/Swiss-Prot
    B2KGE5
    Related
    ENSMUSP00000101658.3, ENSMUST00000106043.3
    Conserved Domains (1) summary
    pfam14982
    Location:60123
    UPF0731; UPF0731 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    129384983..129385749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)