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Rpl39l ribosomal protein L39-like [ Mus musculus (house mouse) ]

Gene ID: 68172, updated on 8-Feb-2024

Summary

Official Symbol
Rpl39lprovided by MGI
Official Full Name
ribosomal protein L39-likeprovided by MGI
Primary source
MGI:MGI:1915422
See related
Ensembl:ENSMUSG00000039209 AllianceGenome:MGI:1915422
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930517K11Rik
Summary
Predicted to be part of cytosolic large ribosomal subunit. Is expressed in 2-cell stage embryo; 4-cell stage embryo; forelimb; and humerus cartilage condensation. Orthologous to human RPL39L (ribosomal protein L39 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 100.6) See more
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Genomic context

See Rpl39l in Genome Data Viewer
Location:
16 A1; 16 5.49 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (9988061..9992775)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (10170197..10174911)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_40070 Neighboring gene STARR-seq mESC enhancer starr_40071 Neighboring gene STARR-seq mESC enhancer starr_40072 Neighboring gene STARR-seq mESC enhancer starr_40073 Neighboring gene activating transcription factor 7 interacting protein 2 Neighboring gene STARR-seq mESC enhancer starr_40074 Neighboring gene STARR-seq mESC enhancer starr_40076 Neighboring gene predicted gene, 24667 Neighboring gene epithelial membrane protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural constituent of ribosome IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in spermatogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
large ribosomal subunit protein eL39-like
Names
60S ribosomal protein L39-like
ribosomal protein L39-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026594.2NP_080870.1  large ribosomal subunit protein eL39-like

    See identical proteins and their annotated locations for NP_080870.1

    Status: VALIDATED

    Source sequence(s)
    AK019681
    Consensus CDS
    CCDS37248.1
    UniProtKB/Swiss-Prot
    Q9CQD0
    Related
    ENSMUSP00000041794.6, ENSMUST00000044103.6
    Conserved Domains (1) summary
    pfam00832
    Location:950
    Ribosomal_L39; Ribosomal L39 protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    9988061..9992775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522506.4XP_006522569.1  large ribosomal subunit protein eL39-like isoform X1

    See identical proteins and their annotated locations for XP_006522569.1

    UniProtKB/Swiss-Prot
    Q9CQD0
    Related
    ENSMUSP00000112791.2, ENSMUST00000121292.8
    Conserved Domains (1) summary
    pfam00832
    Location:950
    Ribosomal_L39; Ribosomal L39 protein