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Snrpg small nuclear ribonucleoprotein polypeptide G [ Mus musculus (house mouse) ]

Gene ID: 68011, updated on 1-Mar-2024

Summary

Official Symbol
Snrpgprovided by MGI
Official Full Name
small nuclear ribonucleoprotein polypeptide Gprovided by MGI
Primary source
MGI:MGI:1915261
See related
Ensembl:ENSMUSG00000057278 AllianceGenome:MGI:1915261
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SMG; sm-G; snRNP-G; 2810024K17Rik
Summary
Predicted to contribute to RNA binding activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of several cellular components, including methylosome; small nuclear ribonucleoprotein complex; and spliceosomal complex. Predicted to be active in P granule. Is expressed in nervous system; renal cortex; sensory organ; and thymus primordium. Orthologous to human SNRPG (small nuclear ribonucleoprotein polypeptide G). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 172.5), liver E14 (RPKM 152.1) and 25 other tissues See more
Orthologs
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Genomic context

See Snrpg in Genome Data Viewer
Location:
6 D1; 6 37.69 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (86348522..86355884)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (86371540..86378902)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene katanin p80 (WD40-containing) subunit B 1 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2792 Neighboring gene family with sequence similarity 136, member A Neighboring gene STARR-positive B cell enhancer ABC_E4839 Neighboring gene predicted gene, 52865 Neighboring gene prenylcysteine oxidase 1 Neighboring gene STARR-positive B cell enhancer ABC_E11322

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
contributes_to RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables U1 snRNP binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in mRNA splicing, via spliceosome ISO
Inferred from Sequence Orthology
more info
 
involved_in spliceosomal snRNP assembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in P granule IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of SMN-Sm protein complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of SMN-Sm protein complex ISO
Inferred from Sequence Orthology
more info
 
part_of U1 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of U1 snRNP ISO
Inferred from Sequence Orthology
more info
 
part_of U12-type spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of U12-type spliceosomal complex ISO
Inferred from Sequence Orthology
more info
 
part_of U2 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of U2-type catalytic step 2 spliceosome ISO
Inferred from Sequence Orthology
more info
 
part_of U2-type precatalytic spliceosome ISO
Inferred from Sequence Orthology
more info
 
part_of U2-type prespliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of U2-type spliceosomal complex ISO
Inferred from Sequence Orthology
more info
 
part_of U4 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of U4 snRNP ISO
Inferred from Sequence Orthology
more info
 
part_of U4/U6 x U5 tri-snRNP complex ISO
Inferred from Sequence Orthology
more info
 
part_of U5 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of U7 snRNP ISO
Inferred from Sequence Orthology
more info
 
part_of catalytic step 2 spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of catalytic step 2 spliceosome ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
part_of methylosome ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
part_of precatalytic spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
part_of spliceosomal complex ISO
Inferred from Sequence Orthology
more info
 
part_of spliceosomal tri-snRNP complex IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
small nuclear ribonucleoprotein G
Names
sm protein G
NP_080782.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026506.2NP_080782.1  small nuclear ribonucleoprotein G

    See identical proteins and their annotated locations for NP_080782.1

    Status: PROVISIONAL

    Source sequence(s)
    AK013235
    Consensus CDS
    CCDS39541.1
    UniProtKB/Swiss-Prot
    P62309, Q52KC7
    Related
    ENSMUSP00000086987.6, ENSMUST00000089558.7
    Conserved Domains (1) summary
    cd01719
    Location:574
    Sm_G; Sm protein G

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    86348522..86355884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)