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1600012H06Rik RIKEN cDNA 1600012H06 gene [ Mus musculus (house mouse) ]

Gene ID: 67912, updated on 26-Sep-2022

Summary

Official Symbol
1600012H06Rikprovided by MGI
Official Full Name
RIKEN cDNA 1600012H06 geneprovided by MGI
Primary source
MGI:MGI:1915162
See related
Ensembl:ENSMUSG00000050088 AllianceGenome:MGI:1915162
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to act upstream of or within apoptotic process. Predicted to be located in extracellular region. Is expressed in several structures, including head mesenchyme; heart ventricle; lung; pituitary gland; and tongue. Orthologous to human C6orf120 (chromosome 6 open reading frame 120). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 18.4), colon adult (RPKM 16.9) and 28 other tissues See more
Orthologs
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Genomic context

See 1600012H06Rik in Genome Data Viewer
Location:
17; 17 A2
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (15163446..15166201)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (14943184..14945939)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene, 23352 Neighboring gene WD repeat domain 27 Neighboring gene PHD finger protein 10 Neighboring gene RIKEN cDNA 9030025P20 gene Neighboring gene dynein light chain Tctex-type 2A3 Neighboring gene predicted gene 3255

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
 
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
UPF0669 protein C6orf120 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001083880.1NP_001077349.1  UPF0669 protein C6orf120 homolog precursor

    See identical proteins and their annotated locations for NP_001077349.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate splice site in the 5' UTR, compared to variant 1. All variants encode the same protein.
    Source sequence(s)
    AC154411
    Consensus CDS
    CCDS37444.1
    UniProtKB/Swiss-Prot
    Q9CU86, Q9DAY5
    UniProtKB/TrEMBL
    A0A6P5RAF0, A0A8C6I9V5
    Related
    ENSMUSP00000133628.2, ENSMUST00000174004.2
    Conserved Domains (1) summary
    pfam17065
    Location:1185
    UPF0669; Putative cytokine, C6ORF120
  2. NM_001083881.1NP_001077350.1  UPF0669 protein C6orf120 homolog precursor

    See identical proteins and their annotated locations for NP_001077350.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) and variants 2, 3 and 4 encode the same protein.
    Source sequence(s)
    AC154411, AK150772, AU254107, BB610149
    Consensus CDS
    CCDS37444.1
    UniProtKB/Swiss-Prot
    Q9CU86, Q9DAY5
    UniProtKB/TrEMBL
    A0A6P5RAF0, A0A8C6I9V5
    Related
    ENSMUSP00000125970.3, ENSMUST00000164837.3
    Conserved Domains (1) summary
    pfam17065
    Location:1185
    UPF0669; Putative cytokine, C6ORF120
  3. NM_001083882.1NP_001077351.1  UPF0669 protein C6orf120 homolog precursor

    See identical proteins and their annotated locations for NP_001077351.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks a splice junction in the 5' UTR, compared to variant 1. All variants encode the same protein.
    Source sequence(s)
    AK076441, AK083064, AU254107, BB610149
    Consensus CDS
    CCDS37444.1
    UniProtKB/Swiss-Prot
    Q9CU86, Q9DAY5
    UniProtKB/TrEMBL
    A0A6P5RAF0, A0A8C6I9V5
    Conserved Domains (1) summary
    pfam17065
    Location:1185
    UPF0669; Putative cytokine, C6ORF120
  4. NM_026451.2NP_080727.2  UPF0669 protein C6orf120 homolog precursor

    See identical proteins and their annotated locations for NP_080727.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate splice site in the 5' UTR, compared to variant 1. All variants encode the same protein.
    Source sequence(s)
    AK005427, AK083064, AU254107, BB610149
    Consensus CDS
    CCDS37444.1
    UniProtKB/Swiss-Prot
    Q9CU86, Q9DAY5
    UniProtKB/TrEMBL
    A0A6P5RAF0, A0A8C6I9V5
    Related
    ENSMUSP00000093344.5, ENSMUST00000052691.9
    Conserved Domains (1) summary
    pfam17065
    Location:1185
    UPF0669; Putative cytokine, C6ORF120

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    15163446..15166201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)