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Ttc39d tetratricopeptide repeat domain 39D [ Mus musculus (house mouse) ]

Gene ID: 67737, updated on 26-Sep-2022

Summary

Official Symbol
Ttc39dprovided by MGI
Official Full Name
tetratricopeptide repeat domain 39Dprovided by MGI
Primary source
MGI:MGI:1914987
See related
Ensembl:ENSMUSG00000046196 AllianceGenome:MGI:1914987
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930560E09Rik
Summary
Predicted to be involved in several processes, including cholesterol homeostasis; negative regulation of cholesterol storage; and regulation of cholesterol efflux. Orthologous to human TTC39DP (tetratricopeptide repeat domain 39D, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See Ttc39d in Genome Data Viewer
Location:
17; 17 E3
Exon count:
1
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (80523343..80525365)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (80215914..80217936)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene microRNA 12189 Neighboring gene serine and arginine-rich splicing factor 7 Neighboring gene gem nuclear organelle associated protein 6 Neighboring gene DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 Neighboring gene MORN repeat containing 2 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 33 Neighboring gene predicted gene 10190

Genomic regions, transcripts, and products

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in cholesterol homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in negative regulation of cholesterol storage IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of cholesterol efflux IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of cholesterol metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
tetratricopeptide repeat domain 39D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026351.2NP_080627.2  tetratricopeptide repeat domain 39D

    See identical proteins and their annotated locations for NP_080627.2

    Status: VALIDATED

    Source sequence(s)
    BC118947, BX633864
    Consensus CDS
    CCDS50187.1
    UniProtKB/TrEMBL
    Q0VF76
    Related
    ENSMUSP00000053781.4, ENSMUST00000053168.4
    Conserved Domains (2) summary
    pfam10300
    Location:69509
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:521573
    TPR_12; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    80523343..80525365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)