U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

1700011L22Rik RIKEN cDNA 1700011L22 gene [ Mus musculus (house mouse) ]

Gene ID: 67687, updated on 5-Mar-2024

Summary

Official Symbol
1700011L22Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700011L22 geneprovided by MGI
Primary source
MGI:MGI:1914937
See related
Ensembl:ENSMUSG00000031682 AllianceGenome:MGI:1914937
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C4orf51 (chromosome 4 open reading frame 51). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 103.3) See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See 1700011L22Rik in Genome Data Viewer
Location:
8 C1; 8 37.48 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (79937059..79975212, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (79210430..79248663, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_22004 Neighboring gene STARR-positive B cell enhancer ABC_E8250 Neighboring gene predicted gene, 22044 Neighboring gene zinc finger protein 827 Neighboring gene predicted gene, 30271 Neighboring gene predicted gene, 30329 Neighboring gene methylmalonic aciduria (cobalamin deficiency) type A Neighboring gene predicted gene 4890

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C4orf51 homolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026315.1NP_080591.1  uncharacterized protein C4orf51 homolog

    See identical proteins and their annotated locations for NP_080591.1

    Status: VALIDATED

    Source sequence(s)
    AC101790
    Consensus CDS
    CCDS52605.1
    UniProtKB/Swiss-Prot
    G3X910, Q9DAF8
    Related
    ENSMUSP00000034109.5, ENSMUST00000034109.6
    Conserved Domains (1) summary
    pfam15849
    Location:1174
    DUF4722; Domain of unknown function (DUF4722)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    79937059..79975212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011248492.3XP_011246794.1  uncharacterized protein C4orf51 homolog isoform X1

    Conserved Domains (1) summary
    pfam15849
    Location:1124
    DUF4722; Domain of unknown function (DUF4722)