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4930453N24Rik RIKEN cDNA 4930453N24 gene [ Mus musculus (house mouse) ]

Gene ID: 67609, updated on 5-Mar-2024

Summary

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Official Symbol
4930453N24Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930453N24 geneprovided by MGI
Primary source
MGI:MGI:1914859
See related
Ensembl:ENSMUSG00000059920 AllianceGenome:MGI:1914859
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
din
Summary
Predicted to be involved in positive regulation of apoptotic process. Predicted to act upstream of or within apoptotic process. Predicted to be located in nucleus. Orthologous to human C3orf38 (chromosome 3 open reading frame 38). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 37.9), CNS E11.5 (RPKM 4.8) and 11 other tissues See more
Orthologs
human all
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Genomic context

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See 4930453N24Rik in Genome Data Viewer
Location:
16 C1.3; 16 37.1 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (64583267..64592735, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (64762205..64772372, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene Eph receptor A3 Neighboring gene STARR-seq mESC enhancer starr_41140 Neighboring gene predicted gene, 41466 Neighboring gene STARR-seq mESC enhancer starr_41141 Neighboring gene STARR-seq mESC enhancer starr_41142 Neighboring gene STARR-seq mESC enhancer starr_41143 Neighboring gene STARR-seq mESC enhancer starr_41144 Neighboring gene STARR-seq mESC enhancer starr_41145 Neighboring gene casein kinase 2, alpha prime interacting protein Neighboring gene STARR-seq mESC enhancer starr_41146 Neighboring gene STARR-seq mESC enhancer starr_41148 Neighboring gene STARR-positive B cell enhancer mm9_chr16:64851511-64851812 Neighboring gene zinc finger protein 654 Neighboring gene CGG triplet repeat binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Dense incisors (din): a new mouse mutation on chromosome 16 affecting tooth eruption and body size. Sweet HO, et al. J Hered, 1996 Mar-Apr. PMID 8830097
  2. Discovery and characterization of spontaneous mouse models of craniofacial dysmorphology. Palmer K, et al. Dev Biol, 2016 Jul 15. PMID 26234751, Free PMC Article
  3. Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders. Fairfield H, et al. Genome Res, 2015 Jul. PMID 25917818, Free PMC Article
  4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
uncharacterized protein C3orf38 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026273.2 → NP_080549.1  uncharacterized protein C3orf38 homolog

    See identical proteins and their annotated locations for NP_080549.1

    Status: PROVISIONAL

    Source sequence(s)
    AK161311
    Consensus CDS
    CCDS28265.1
    UniProtKB/Swiss-Prot
    A9C482, Q3TTL0, Q8VE03
    Related
    ENSMUSP00000076255.7, ENSMUST00000076991.7
    Conserved Domains (1) summary
    pfam15008
    Location:8 → 272
    DUF4518; Domain of unknown function (DUF4518)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    64583267..64592735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522489.4 → XP_006522552.1  uncharacterized protein C3orf38 homolog isoform X1

    Conserved Domains (1) summary
    pfam15008
    Location:8 → 273
    DUF4518; Domain of unknown function (DUF4518)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3TTL0.1 GenPept UniProtKB/Swiss-Prot:Q3TTL0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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