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Ppfibp1 PTPRF interacting protein, binding protein 1 (liprin beta 1) [ Mus musculus (house mouse) ]

Gene ID: 67533, updated on 2-Nov-2024

Summary

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Official Symbol
Ppfibp1provided by MGI
Official Full Name
PTPRF interacting protein, binding protein 1 (liprin beta 1)provided by MGI
Primary source
MGI:MGI:1914783
See related
Ensembl:ENSMUSG00000016487 AllianceGenome:MGI:1914783
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4632409B19Rik
Summary
Predicted to be involved in neuromuscular junction development. Predicted to be located in plasma membrane. Predicted to be active in presynaptic active zone. Is expressed in central nervous system; heart; and retina. Orthologous to human PPFIBP1 (PPFIA binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in bladder adult (RPKM 15.6), limb E14.5 (RPKM 10.2) and 24 other tissues See more
Orthologs
human all
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Genomic context

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See Ppfibp1 in Genome Data Viewer
Location:
6 G3; 6 77.7 cM
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (146788107..146933523)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (146886609..147032025)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_17808 Neighboring gene STARR-seq mESC enhancer starr_17809 Neighboring gene basic helix-loop-helix ARNT like 2 Neighboring gene single-pass membrane protein with coiled-coil domains 2 Neighboring gene STARR-positive B cell enhancer mm9_chr6:146842338-146842638 Neighboring gene RIKEN cDNA 1700034J05 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:146991206-146991315 Neighboring gene predicted gene, 35876 Neighboring gene RAB15 effector protein Neighboring gene mitochondrial ribosomal protein S35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Liprin beta 1, a member of the family of LAR transmembrane tyrosine phosphatase-interacting proteins, is a new target for the metastasis-associated protein S100A4 (Mts1). Kriajevska M, et al. J Biol Chem, 2002 Feb 15. PMID 11836260
  2. Lhx2 specifies regional fate in Emx1 lineage of telencephalic progenitors generating cerebral cortex. Chou SJ, et al. Nat Neurosci, 2009 Nov. PMID 19820705, Free PMC Article
  3. Expansion of the piriform cortex contributes to corticothalamic pathfinding defects in Gli3 conditional mutants. Amaniti EM, et al. Cereb Cortex, 2015 Feb. PMID 24014668
  4. Compensatory Actions of Ldb Adaptor Proteins During Corticospinal Motor Neuron Differentiation. Leone DP, et al. Cereb Cortex, 2017 Feb 1. PMID 26830346, Free PMC Article
  5. A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart. Kalsotra A, et al. Proc Natl Acad Sci U S A, 2008 Dec 23. PMID 19075228, Free PMC Article

See all (28) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. new molecular target of the S100A4 protein, liprin beta1
    Title: Liprin beta 1, a member of the family of LAR transmembrane tyrosine phosphatase-interacting proteins, is a new target for the metastasis-associated protein S100A4 (Mts1).
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in cortical microtubule organization IEA
Inferred from Electronic Annotation
more info
  
involved_in neuromuscular junction development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cell cortex IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  
is_active_in presynaptic active zone IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
liprin-beta-1
Names
PTPRF-interacting protein-binding protein 1
protein tyrosine phosphatase receptor type f polypeptide-interacting protein-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001170433.1 → NP_001163904.1  liprin-beta-1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC153575, AC156394, BC072603
    Consensus CDS
    CCDS51958.1
    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Related
    ENSMUSP00000107250.3, ENSMUST00000111623.9
    Conserved Domains (8) summary
    cd09563
    Location:614 → 677
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:688 → 750
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:773 → 844
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    smart00454
    Location:614 → 678
    SAM; Sterile alpha motif
    pfam01519
    Location:105 → 156
    DUF16; Protein of unknown function DUF16
    pfam14662
    Location:106 → 314
    KASH_CCD; Coiled-coil region of CCDC155 or KASH
    cl21478
    Location:213 → 307
    ATP-synt_B; ATP synthase B/B' CF(0)
    cl23720
    Location:134 → 255
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  2. NM_001355728.1 → NP_001342657.1  liprin-beta-1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC153575, AC156394
    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:666 → 729
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:740 → 802
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:825 → 896
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:100 → 378
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. NM_001355729.1 → NP_001342658.1  liprin-beta-1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC153575, AC156394
    Consensus CDS
    CCDS39715.1
    UniProtKB/Swiss-Prot
    Q69ZN5, Q6GQV3, Q80VB4, Q8C8U0, Q9CUT7
    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:603 → 666
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:677 → 739
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:762 → 833
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    cl25732
    Location:47 → 310
    SMC_N; RecF/RecN/SMC N terminal domain

  4. NM_026221.2 → NP_080497.1  liprin-beta-1 isoform 2

    See identical proteins and their annotated locations for NP_080497.1

    Status: VALIDATED

    Source sequence(s)
    AC153575, AC156394, BC072603
    Consensus CDS
    CCDS39715.1
    UniProtKB/Swiss-Prot
    Q69ZN5, Q6GQV3, Q80VB4, Q8C8U0, Q9CUT7
    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Related
    ENSMUSP00000016631.8, ENSMUST00000016631.14
    Conserved Domains (4) summary
    cd09563
    Location:603 → 666
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:677 → 739
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:762 → 833
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    cl25732
    Location:47 → 310
    SMC_N; RecF/RecN/SMC N terminal domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    146788107..146933523
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011241625.2 → XP_011239927.1  liprin-beta-1 isoform X1

    See identical proteins and their annotated locations for XP_011239927.1

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:666 → 729
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:740 → 802
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:825 → 896
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:100 → 378
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_011241624.2 → XP_011239926.1  liprin-beta-1 isoform X1

    See identical proteins and their annotated locations for XP_011239926.1

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:666 → 729
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:740 → 802
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:825 → 896
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:100 → 378
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_006507098.4 → XP_006507161.1  liprin-beta-1 isoform X4

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:655 → 718
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:729 → 791
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:814 → 885
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:100 → 378
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_006507096.3 → XP_006507159.1  liprin-beta-1 isoform X2

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:656 → 719
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:730 → 792
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:815 → 886
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:100 → 378
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  5. XM_011241627.2 → XP_011239929.1  liprin-beta-1 isoform X5

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:645 → 708
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:719 → 781
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:804 → 875
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:100 → 378
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  6. XM_006507097.3 → XP_006507160.1  liprin-beta-1 isoform X3

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:655 → 718
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:729 → 791
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:814 → 885
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:47 → 341
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  7. XM_006507101.3 → XP_006507164.1  liprin-beta-1 isoform X13

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:644 → 707
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:718 → 780
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:803 → 874
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:47 → 341
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  8. XM_006507099.3 → XP_006507162.1  liprin-beta-1 isoform X6

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:645 → 708
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:719 → 781
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:804 → 875
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:47 → 341
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  9. XM_036152273.1 → XP_036008166.1  liprin-beta-1 isoform X8

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:634 → 697
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:708 → 770
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:793 → 864
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:47 → 341
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  10. XM_006507102.3 → XP_006507165.1  liprin-beta-1 isoform X7

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:635 → 698
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:709 → 771
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:794 → 865
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:47 → 321
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  11. XM_036152275.1 → XP_036008168.1  liprin-beta-1 isoform X10

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:624 → 687
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:698 → 760
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:783 → 854
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:47 → 321
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  12. XM_006507103.3 → XP_006507166.1  liprin-beta-1 isoform X9

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:624 → 687
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:698 → 760
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:783 → 854
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:47 → 310
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  13. XM_011241629.2 → XP_011239931.1  liprin-beta-1 isoform X12

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:613 → 676
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:687 → 749
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:772 → 843
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:47 → 310
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  14. XM_011241628.2 → XP_011239930.1  liprin-beta-1 isoform X11

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:614 → 677
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:688 → 750
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:773 → 844
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:47 → 310
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  15. XM_036152272.1 → XP_036008165.1  liprin-beta-1 isoform X4

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:655 → 718
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:729 → 791
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:814 → 885
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:100 → 378
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  16. XM_036152274.1 → XP_036008167.1  liprin-beta-1 isoform X8

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:634 → 697
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:708 → 770
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:793 → 864
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:47 → 341
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  17. XM_030255565.1 → XP_030111425.1  liprin-beta-1 isoform X7

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:635 → 698
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:709 → 771
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:794 → 865
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:47 → 321
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  18. XM_011241626.3 → XP_011239928.1  liprin-beta-1 isoform X1

    See identical proteins and their annotated locations for XP_011239928.1

    UniProtKB/TrEMBL
    Q3U417, Q3UJ84
    Conserved Domains (4) summary
    cd09563
    Location:666 → 729
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:740 → 802
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:825 → 896
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:100 → 378
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8C8U0.3 GenPept UniProtKB/Swiss-Prot:Q8C8U0

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