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1700054K19Rik RIKEN cDNA 1700054K19 gene [ Mus musculus (house mouse) ]

Gene ID: 67336, updated on 8-Feb-2024

Summary

Official Symbol
1700054K19Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700054K19 geneprovided by MGI
Primary source
MGI:MGI:1914586
See related
Ensembl:ENSMUSG00000100219 AllianceGenome:MGI:1914586
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

See 1700054K19Rik in Genome Data Viewer
Location:
6 E3; 6 52.14 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (112187669..112189480)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (112210708..112212519)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene D-tyrosyl-tRNA deacylase 1 homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_16998 Neighboring gene predicted gene 20387 Neighboring gene STARR-seq mESC enhancer starr_16999 Neighboring gene glutamate receptor, metabotropic 7 Neighboring gene STARR-seq mESC enhancer starr_17000 Neighboring gene STARR-seq mESC enhancer starr_17001 Neighboring gene STARR-seq mESC enhancer starr_17002 Neighboring gene STARR-seq mESC enhancer starr_17005 Neighboring gene STARR-seq mESC enhancer starr_17006 Neighboring gene STARR-seq mESC enhancer starr_17008 Neighboring gene STARR-seq mESC enhancer starr_17009 Neighboring gene STARR-seq mESC enhancer starr_17010 Neighboring gene STARR-seq mESC enhancer starr_17012 Neighboring gene STARR-seq mESC enhancer starr_17013 Neighboring gene STARR-seq mESC enhancer starr_17014 Neighboring gene RIKEN cDNA 5031434C07 gene Neighboring gene STARR-seq mESC enhancer starr_17015 Neighboring gene LIM and cysteine-rich domains 1 Neighboring gene ssu-2 homolog

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027865.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC157094, BY707289
    Related
    ENSMUST00000186102.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    112187669..112189480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)