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Gm8817 predicted gene 8817 [ Mus musculus (house mouse) ]

Gene ID: 667794, updated on 22-Oct-2024

Summary

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Official Symbol
Gm8817provided by MGI
Official Full Name
predicted gene 8817provided by MGI
Primary source
MGI:MGI:3648637
See related
Ensembl:ENSMUSG00000086008 AllianceGenome:MGI:3648637
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG667794
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm8817 in Genome Data Viewer
Location:
X F5; X 78.24 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (165846227..165853366, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (167063231..167070370, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene nuclear encoded tRNA serine 3 (anticodon AGA) Neighboring gene STARR-seq mESC enhancer starr_48263 Neighboring gene ferritin light chain 2 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chrX:163526851-163527151 Neighboring gene predicted gene 15232 Neighboring gene STARR-seq mESC enhancer starr_48264 Neighboring gene STARR-seq mESC enhancer starr_48265 Neighboring gene predicted gene, 39549

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_169156.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL671993
    Related
    ENSMUST00000253856.1

  2. NR_169158.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671993
    Related
    ENSMUST00000253853.1

  3. NR_169159.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671993
    Related
    ENSMUST00000133867.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    165846227..165853366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001101606.1: Suppressed sequence

    Description
    NM_001101606.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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