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Snrnp27 small nuclear ribonucleoprotein 27 (U4/U6.U5) [ Mus musculus (house mouse) ]

Gene ID: 66618, updated on 30-Apr-2024

Summary

Official Symbol
Snrnp27provided by MGI
Official Full Name
small nuclear ribonucleoprotein 27 (U4/U6.U5)provided by MGI
Primary source
MGI:MGI:1913868
See related
Ensembl:ENSMUSG00000001158 AllianceGenome:MGI:1913868
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ry1; 2610209M04Rik
Summary
Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Orthologous to human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 21.9), bladder adult (RPKM 19.1) and 26 other tissues See more
Orthologs
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Genomic context

See Snrnp27 in Genome Data Viewer
Location:
6 D1; 6 37.75 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (86652151..86661473, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (86675169..86684491, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene aspartic peptidase, retroviral-like 1 Neighboring gene MAX dimerization protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E860 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:86634487-86634670 Neighboring gene germ cell-less, spermatogenesis associated 1 Neighboring gene STARR-positive B cell enhancer ABC_E3661 Neighboring gene annexin A4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
 
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 
involved_in biological_process ND
No biological Data available
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
Names
U4/U6.U5 snRNP 27 kDa protein
U4/U6.U5 tri-snRNP-associated protein 3
U4/U6.U5-27K
putative nucleic acid binding protein RY-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025665.2NP_079941.1  U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein

    See identical proteins and their annotated locations for NP_079941.1

    Status: PROVISIONAL

    Source sequence(s)
    AK011937
    Consensus CDS
    CCDS20315.1
    UniProtKB/Swiss-Prot
    Q8BRA8, Q8K194, Q9CSV0
    Related
    ENSMUSP00000001186.5, ENSMUST00000001186.11
    Conserved Domains (1) summary
    pfam08648
    Location:98154
    DUF1777; Protein of unknown function (DUF1777)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    86652151..86661473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)