Format

Send to:

Choose Destination

1700029H14Rik RIKEN cDNA 1700029H14 gene [ Mus musculus (house mouse) ]

Gene ID: 66501, updated on 25-Sep-2020

Summary

Official Symbol
1700029H14Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700029H14 geneprovided by MGI
Primary source
MGI:MGI:1913751
See related
Ensembl:ENSMUSG00000031452
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 163.6) See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See 1700029H14Rik in Genome Data Viewer
Location:
8; 8 A1.1
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (13600722..13612555, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (13550722..13562555, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (13550733..13562448, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor kinase 1 Neighboring gene transmembrane protein 255B Neighboring gene growth arrest specific 6 Neighboring gene uncharacterized LOC118567544 Neighboring gene RAS p21 protein activator 3 Neighboring gene predicted gene, 34795 Neighboring gene VISTA enhancer mm1751

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C13orf46 homolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080781.2NP_001074250.1  uncharacterized protein C13orf46 homolog isoform 2

    See identical proteins and their annotated locations for NP_001074250.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and uses an alternate splice site in the 3' coding region, which results in frameshift, compared to variant 1. The encoded protein (isoform 2) has a distinct C-terminus and is shorter, compared to isoform 1.
    Source sequence(s)
    AK006340, AK006493, AV284229, BY094048
    Consensus CDS
    CCDS40233.1
    UniProtKB/TrEMBL
    G3X906, Q9D9Y4
    Related
    ENSMUSP00000140119.1, ENSMUST00000187391.6
  2. NM_025601.3NP_079877.1  uncharacterized protein C13orf46 homolog isoform 1

    See identical proteins and their annotated locations for NP_079877.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer protein (isoform 1).
    Source sequence(s)
    AK006340, AV284229, BY094048
    Consensus CDS
    CCDS52488.1
    UniProtKB/TrEMBL
    Q9D9Y4
    Related
    ENSMUSP00000147812.1, ENSMUST00000209207.1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    13600722..13612555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243717.1XP_030099577.1  uncharacterized protein C13orf46 homolog isoform X2

  2. XM_030243716.2XP_030099576.1  uncharacterized protein C13orf46 homolog isoform X1

Support Center