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Rpl36al ribosomal protein L36A-like [ Mus musculus (house mouse) ]

Gene ID: 66483, updated on 11-Apr-2024

Summary

Official Symbol
Rpl36alprovided by MGI
Official Full Name
ribosomal protein L36A-likeprovided by MGI
Primary source
MGI:MGI:1913733
See related
Ensembl:ENSMUSG00000049751 AllianceGenome:MGI:1913733
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
RPL36A; 2410038A03Rik
Summary
Predicted to be a structural constituent of ribosome. Acts upstream of or within response to retinoic acid. Predicted to be located in several cellular components, including endoplasmic reticulum; nucleus; and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to several human genes including RPL36A (ribosomal protein L36a). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in liver E14 (RPKM 241.6), placenta adult (RPKM 239.0) and 25 other tissues See more
Orthologs
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Genomic context

See Rpl36al in Genome Data Viewer
Location:
12 C2; 12 28.73 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (69229508..69230841, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (69182734..69184067, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:70260497-70260606 Neighboring gene 7S RNA 1 Neighboring gene STARR-seq mESC enhancer starr_32359 Neighboring gene STARR-positive B cell enhancer ABC_E8485 Neighboring gene leucine rich repeat protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E5332 Neighboring gene mannoside acetylglucosaminyltransferase 2 Neighboring gene dynein, axonemal assembly factor 2 Neighboring gene RIKEN cDNA 9330151L19 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
part_of cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ribosomal protein eL42-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025589.4NP_079865.1  ribosomal protein eL42-like

    See identical proteins and their annotated locations for NP_079865.1

    Status: VALIDATED

    Source sequence(s)
    AK153544, AV513698, BU938789
    Consensus CDS
    CCDS25946.1
    UniProtKB/Swiss-Prot
    P83882
    UniProtKB/TrEMBL
    A0A0A6YW33, Q5M9P1
    Related
    ENSMUSP00000059766.7, ENSMUST00000054544.7
    Conserved Domains (1) summary
    PTZ00157
    Location:186
    PTZ00157; 60S ribosomal protein L36a; Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    69229508..69230841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)