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1810009A15Rik RIKEN cDNA 1810009A15 gene [ Mus musculus (house mouse) ]

Gene ID: 66276, updated on 16-Mar-2024

Summary

Official Symbol
1810009A15Rikprovided by MGI
Official Full Name
RIKEN cDNA 1810009A15 geneprovided by MGI
Primary source
MGI:MGI:1913526
See related
Ensembl:ENSMUSG00000071653 AllianceGenome:MGI:1913526
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This gene shares three exons in common with another gene, LBH domain containing 1 (GeneID:102308570), but the encoded protein uses a reading frame that is different from that of the LBH domain containing 1 gene. [provided by RefSeq, Nov 2017]
Expression
Broad expression in CNS E11.5 (RPKM 37.2), liver E14 (RPKM 28.7) and 25 other tissues See more
Orthologs
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Genomic context

See 1810009A15Rik in Genome Data Viewer
Location:
19 A; 19 5.93 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (8866247..8868123)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (8888883..8890759)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene LBH domain containing 1 Neighboring gene RIKEN cDNA 5730408K05 gene Neighboring gene STARR-positive B cell enhancer ABC_E11017 Neighboring gene small nucleolar RNA, H/ACA box 57 Neighboring gene microRNA 5136 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:8967434-8967543 Neighboring gene integrator complex subunit 5 Neighboring gene STARR-positive B cell enhancer ABC_E4265 Neighboring gene alpha glucosidase 2 alpha neutral subunit

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C11orf98 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025463.3NP_079739.1  uncharacterized protein C11orf98 homolog

    See identical proteins and their annotated locations for NP_079739.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the protein-coding transcript.
    Source sequence(s)
    AV210692, BC058702, BY264380
    Consensus CDS
    CCDS29555.1
    UniProtKB/Swiss-Prot
    Q9D937
    UniProtKB/TrEMBL
    Q9CSS6
    Related
    ENSMUSP00000093970.4, ENSMUST00000096251.10

RNA

  1. NR_104416.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs at the 5' end compared to variant 1. It is represented as non-coding because the use of the 5'-most translational start codon, as used in variant 1, renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AV210692, BC058702, BY264380, BY273399
    Related
    ENSMUST00000186647.7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    8866247..8868123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)