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1500011B03Rik RIKEN cDNA 1500011B03 gene [ Mus musculus (house mouse) ]

Gene ID: 66236, updated on 31-Jan-2019

Summary

Official Symbol
1500011B03Rikprovided by MGI
Official Full Name
RIKEN cDNA 1500011B03 geneprovided by MGI
Primary source
MGI:MGI:1913486
See related
Ensembl:ENSMUSG00000072694
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI415201; AV141149; AW556386
Expression
Broad expression in CNS E18 (RPKM 35.7), frontal lobe adult (RPKM 31.6) and 24 other tissues See more

Genomic context

See 1500011B03Rik in Genome Data Viewer
Location:
5; 5 F
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (114808196..114813976, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (115258205..115263985, complement)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene GIT ArfGAP 2 Neighboring gene RIKEN cDNA 4930515G01 gene Neighboring gene ankyrin repeat domain 13a Neighboring gene RIKEN cDNA 2610524H06 gene Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027817.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AI849454, AK018264, BU700681, BY267441
    Related
    ENSMUST00000112160.3
  2. NR_027818.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 3' end exon compared to variant 1.
    Source sequence(s)
    AK161363, BY267441
    Related
    ENSMUST00000061251.5

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

    Range
    114808196..114813976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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