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Gcnt7 glucosaminyl (N-acetyl) transferase family member 7 [ Mus musculus (house mouse) ]

Gene ID: 654821, updated on 7-May-2024

Summary

Official Symbol
Gcnt7provided by MGI
Official Full Name
glucosaminyl (N-acetyl) transferase family member 7provided by MGI
Primary source
MGI:MGI:3606143
See related
Ensembl:ENSMUSG00000074569 AllianceGenome:MGI:3606143
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
gnt; A330041C17Rik
Summary
Predicted to enable acetylglucosaminyltransferase activity. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Orthologous to human GCNT7 (glucosaminyl (N-acetyl) transferase family member 7). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

See Gcnt7 in Genome Data Viewer
Location:
2 H3; 2 94.87 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (172292233..172302481, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (172450242..172458596, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene aurora kinase A Neighboring gene cleavage stimulation factor, 3' pre-RNA, subunit 1 Neighboring gene STARR-seq mESC enhancer starr_06572 Neighboring gene STARR-positive B cell enhancer ABC_E823 Neighboring gene Cas scaffolding protein family member 4 Neighboring gene uncharacterized LOC118568483 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:172259262-172259485 Neighboring gene STARR-positive B cell enhancer ABC_E3425 Neighboring gene replication termination factor 2 Neighboring gene family with sequence similarity 209 Neighboring gene STARR-seq mESC enhancer starr_06574 Neighboring gene STARR-seq mESC enhancer starr_06576 Neighboring gene predicted gene, 40009 Neighboring gene ribosomal protein S29 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7
Names
beta 1,6-N-acetylglucosaminyltransferase
likely orthologue of H. sapiens chromosome 20 open reading frame 105 (C20orf105)
NP_001034649.1
XP_006500059.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039560.3NP_001034649.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7

    See identical proteins and their annotated locations for NP_001034649.1

    Status: PROVISIONAL

    Source sequence(s)
    AL833787
    Consensus CDS
    CCDS17133.1
    UniProtKB/Swiss-Prot
    B2RSZ6, Q3V174, Q3V3K7
    UniProtKB/TrEMBL
    F7CBR4, F8WK01
    Related
    ENSMUSP00000096659.2, ENSMUST00000099060.2
    Conserved Domains (1) summary
    cl27418
    Location:115374
    Branch; Core-2/I-Branching enzyme

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    172292233..172302481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006499996.5XP_006500059.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 isoform X1

    See identical proteins and their annotated locations for XP_006500059.1

    UniProtKB/Swiss-Prot
    B2RSZ6, Q3V174, Q3V3K7
    UniProtKB/TrEMBL
    F7CBR4, F8WK01
    Conserved Domains (1) summary
    cl27418
    Location:115374
    Branch; Core-2/I-Branching enzyme