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LINC02223 long intergenic non-protein coding RNA 2223 [ Homo sapiens (human) ]

Gene ID: 646241, updated on 22-Oct-2024

Summary

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Official Symbol
LINC02223provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2223provided by HGNC
Primary source
HGNC:HGNC:53092
See related
Ensembl:ENSG00000249937 AllianceGenome:HGNC:53092
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02223 in Genome Data Viewer
Location:
5p15.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (17807274..17930489)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (17807816..17932300)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (17807383..17930598)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3 histone pseudogene 22 Neighboring gene uncharacterized LOC105374666 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:17882437-17883296 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:17883297-17884155 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17951486-17952064 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17952065-17952642 Neighboring gene ribosomal protein L36a pseudogene 21 Neighboring gene small nucleolar RNA SNORD81

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134286.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC113408, BC028204, BC031324
    Related
    ENST00000514771.7

  2. NR_134287.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks multiple 3' exons and contains an alternate 3' end, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC113402, BC031324

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    17807274..17930489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    17807816..17932300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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