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SPATA31C2 SPATA31 subfamily C member 2 [ Homo sapiens (human) ]

Gene ID: 645961, updated on 11-Jun-2021

Summary

Official Symbol
SPATA31C2provided by HGNC
Official Full Name
SPATA31 subfamily C member 2provided by HGNC
Primary source
HGNC:HGNC:24508
See related
Ensembl:ENSG00000177910
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM75C2
Expression
Restricted expression toward testis (RPKM 8.9) See more
Orthologs
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Genomic context

See SPATA31C2 in Genome Data Viewer
Location:
9q22.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (88129305..88138475, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (90744220..90753396, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein S10 pseudogene 3 Neighboring gene uncharacterized LOC102724156 Neighboring gene arginine and serine rich coiled-coil 1 pseudogene Neighboring gene potassium channel tetramerization domain containing 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Clone Names

  • DKFZp434M131

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
putative spermatogenesis-associated protein 31C2
Names
family with sequence similarity 75, member C2
spermatogenesis-associated protein 31C2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166137.1NP_001159609.1  putative spermatogenesis-associated protein 31C2 isoform 2

    See identical proteins and their annotated locations for NP_001159609.1

    Status: VALIDATED

    Source sequence(s)
    AK302448, AL080179, AL353726, DB061043
    UniProtKB/Swiss-Prot
    B4DYI2
    UniProtKB/TrEMBL
    Q9Y4N5
    Related
    ENST00000675441.1
    Conserved Domains (2) summary
    pfam14650
    Location:311600
    FAM75; FAM75 family
    pfam15371
    Location:82161
    DUF4599; Domain of unknown function (DUF4599)
  2. NM_001350978.3NP_001337907.1  putative spermatogenesis-associated protein 31C2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL080179, AL353726, DB076576
    Conserved Domains (3) summary
    pfam14650
    Location:311600
    FAM75; FAM75 family
    pfam15371
    Location:83163
    DUF4599; Domain of unknown function (DUF4599)
    cl26464
    Location:122365
    Atrophin-1; Atrophin-1 family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    88129305..88138475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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