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atp6 ATP synthase F0 subunit 6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 6450195, updated on 18-Aug-2023

Summary

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Gene symbol
atp6
Gene description
ATP synthase F0 subunit 6
Locus tag
OrsajM_p29
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryza sativa Japonica Group (cultivar: Nipponbare)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) MT (non-nuclear) NC_011033.1 (225271..226275, complement)

Chromosome MT - NC_011033.1Genomic Context describing neighboring genes Neighboring gene orf152b Neighboring gene Nuclear-like sequence Neighboring gene NADH dehydrogenase subunit 5 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011033.1 Chromosome MT Reference IRGSP-1.0 non-nuclear

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A unique sequence located downstream from the rice mitochondrial atp6 may cause male sterility. Akagi H, et al. Curr Genet, 1994 Jan. PMID 7915966
  2. Processing followed by complete editing of an altered mitochondrial atp6 RNA restores fertility of cytoplasmic male sterile rice. Iwabuchi M, et al. EMBO J, 1993 Apr. PMID 7682174, Free PMC Article
  3. A chimeric gene containing the 5' portion of atp6 is associated with cytoplasmic male-sterility of rice. Kadowaki K, et al. Mol Gen Genet, 1990 Oct. PMID 2148966
  4. The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Notsu Y, et al. Mol Genet Genomics, 2002 Dec. PMID 12471441
  5. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Boeckmann B, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520024, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Miscellaneous features

  • Loc: c225273 C to U RNA editing
  • Loc: c225311 C to U RNA editing
  • Loc: c225320 C to U RNA editing
  • Loc: c225327 C to U RNA editing
  • Loc: c225464 C to U RNA editing
  • Loc: c225506 C to U RNA editing
  • Loc: c225528 C to U RNA editing
  • Loc: c225722 C to U RNA editing
  • Loc: c225729 C to U RNA editing
  • Loc: c225736 C to U RNA editing
  • Loc: c225755 C to U RNA editing
  • Loc: c225762 C to U RNA editing
  • Loc: c225866 C to U RNA editing
  • Loc: c225908 C to U RNA editing
  • Loc: c225935 C to U RNA editing
  • Loc: c226263 C to U RNA editing

General protein information

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Names
ATP synthase F0 subunit 6

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011033.1 Reference assembly

    Range
    225271..226275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_002000575.1 ATP synthase F0 subunit 6 [Oryza sativa Japonica Group]

    See identical proteins and their annotated locations for YP_002000575.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0PJ36, Q8HCP2
    Conserved Domains (1) summary
    TIGR01131
    Location:87 → 331
    ATP_synt_6_or_A; ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases