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GCC2-AS1 GCC2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 644903, updated on 13-May-2022

Summary

Official Symbol
GCC2-AS1provided by HGNC
Official Full Name
GCC2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:28126
See related
Ensembl:ENSG00000214184 AllianceGenome:HGNC:28126
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in prostate (RPKM 2.1), colon (RPKM 2.0) and 25 other tissues See more
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Genomic context

See GCC2-AS1 in Genome Data Viewer
Location:
2q12.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (108507527..108534219, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (108968208..108994839, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (109123983..109150675, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene sulfotransferase family 1C member 4 Neighboring gene small integral membrane protein 12 pseudogene 1 Neighboring gene GRIP and coiled-coil domain containing 2 Neighboring gene 2q12.3 distal recombination region Neighboring gene Sharpr-MPRA regulatory region 7983 Neighboring gene LIM zinc finger domain containing 1 Neighboring gene Sharpr-MPRA regulatory region 1013 Neighboring gene Sharpr-MPRA regulatory region 6630

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135290.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK095987, BC004487
    Related
    ENST00000322353.3

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    108507527..108534219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    108968208..108994839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039776.1: Suppressed sequence

    Description
    NM_001039776.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
  2. NM_032658.2: Suppressed sequence

    Description
    NM_032658.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein, and it is a nonsense-mediated mRNA decay (NMD) candidate.