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PAFAH1B2P2 PAFAH1B2 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 643711, updated on 23-Nov-2021

Summary

Official Symbol
PAFAH1B2P2provided by HGNC
Official Full Name
PAFAH1B2 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:54906
See related
Ensembl:ENSG00000257501
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See PAFAH1B2P2 in Genome Data Viewer
Location:
12q23.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (97713412..97756517, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (98107190..98150295, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene rhabdomyosarcoma 2 associated transcript Neighboring gene microRNA 135a-2 Neighboring gene NFE2L2 motif-containing MPRA enhancer 214 Neighboring gene RNA, U6 small nuclear 36, pseudogene Neighboring gene microRNA 4495 Neighboring gene microRNA 4303

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene
  • platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) pseudogene

Clone Names

  • FLJ25775

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_077240.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC007424, BC024008
    Related
    ENST00000550548.1
  2. NR_077241.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses alternate 5' and 3' exon structure and is shorter than variant 1.
    Source sequence(s)
    AK098641
    Related
    ENST00000552582.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    97713412..97756517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006969.4: Suppressed sequence

    Description
    NG_006969.4: This RefSeq was permanently suppressed because it is now thought that this gene is not a pseudogene but a transcribed gene with no protein product.
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