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LINC00865 long intergenic non-protein coding RNA 865 [ Homo sapiens (human) ]

Gene ID: 643529, updated on 26-Oct-2024

Summary

Official Symbol
LINC00865provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 865provided by HGNC
Primary source
HGNC:HGNC:45170
See related
Ensembl:ENSG00000232229 AllianceGenome:HGNC:45170
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01374
Expression
Biased expression in testis (RPKM 16.0), urinary bladder (RPKM 4.5) and 13 other tissues See more
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Genomic context

See LINC00865 in Genome Data Viewer
Location:
10q23.31
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (89829493..89840861)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (90712993..90724360)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (91589250..91600618)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:91460993-91461508 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:91461509-91462025 Neighboring gene kinesin family member 20B Neighboring gene NANOG hESC enhancer GRCh37_chr10:91500841-91501342 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2596 Neighboring gene MT-ND5 pseudogene 42 Neighboring gene uncharacterized LOC105378424 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2597 Neighboring gene MARK2 pseudogene 16 Neighboring gene long intergenic non-protein coding RNA 1374 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2598 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:91680718-91681917 Neighboring gene long intergenic non-protein coding RNA 1375

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • hCG2024094
  • long intergenic non-protein coding RNA 1374

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038382.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137595, BC033541, DB062095
    Related
    ENST00000448963.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    89829493..89840861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    90712993..90724360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)