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LINC00616 long intergenic non-protein coding RNA 616 [ Homo sapiens (human) ]

Gene ID: 641365, updated on 12-Jun-2022

Summary

Official Symbol
LINC00616provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 616provided by HGNC
Primary source
HGNC:HGNC:44065
See related
Ensembl:ENSG00000248307 AllianceGenome:HGNC:44065
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.1) See more
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Genomic context

See LINC00616 in Genome Data Viewer
Location:
4q28.3
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (138027422..138130685, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (141350884..141454194, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (138948576..139051839, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377445 Neighboring gene uncharacterized LOC107986315 Neighboring gene uncharacterized LOC105377447 Neighboring gene SLC7A11 antisense RNA 1 Neighboring gene solute carrier family 7 member 11 Neighboring gene long intergenic non-protein coding RNA 499 Neighboring gene U7 small nuclear RNA

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037866.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097511, AC105310
    Related
    ENST00000514600.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    138027422..138130685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    141350884..141454194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)