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SMG1P1 SMG1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 641298, updated on 25-Jan-2022

Summary

Official Symbol
SMG1P1provided by HGNC
Official Full Name
SMG1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:44186
See related
Ensembl:ENSG00000237296 AllianceGenome:HGNC:44186
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in bone marrow (RPKM 28.8), lymph node (RPKM 14.7) and 24 other tissues See more
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Genomic context

See SMG1P1 in Genome Data Viewer
Location:
16p12.2
Exon count:
29
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (22437008..22492220)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (22448329..22503541)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene CDR2 divergent transcript Neighboring gene major facilitator superfamily domain containing 13B (pseudogene) Neighboring gene RRN3 pseudogene 3 Neighboring gene uncharacterized LOC105371131 Neighboring gene nuclear pore complex interacting protein family member B5 Neighboring gene OTOA pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • PI-3-kinase-related kinase SMG-1
  • SMG1P1, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 1
  • smg-1 homolog, phosphatidylinositol 3-kinase-related kinase pseudogene 1

Clone Names

  • KIAA0220, DKFZp547E087

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027154.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC106788
    Related
    ENST00000309865.11

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    22437008..22492220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_017852933.1 Reference GRCh38.p13 PATCHES

    Range
    612822..668031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_199284.2: Suppressed sequence

    Description
    NM_199284.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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