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EKO05_0010895 Histone deacetylase [ Ascochyta rabiei ]

Gene ID: 62219661, updated on 18-Oct-2023

Summary

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Gene symbol
EKO05_0010895
Gene description
Histone deacetylase
Locus tag
EKO05_0010895
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ascochyta rabiei (isolate: Me14, nat-host: Cicer arietinum)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Didymellaceae; Ascochyta
Old locus tag
EKO05_010121
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Genomic context

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Location:
chromosome: 21
Exon count:
1
Sequence:
Chromosome: 21; NC_082425.1 (251597..255238)

Chromosome 21 - NC_082425.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Endopeptidase La Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_082425.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reference Genome Assembly for Australian Ascochyta rabiei Isolate ArME14. Shah RM, et al. G3 (Bethesda), 2020 Jul 7. PMID 32345704, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Repeated regions

  • Loc: 251717-251749 rpt_type = tandem

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Histone deacetylase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_082425.1 Reference assembly

    Range
    251597..255238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038947343.1 → XP_038793154.1  Histone deacetylase [Ascochyta rabiei]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A162ZJC8
    Conserved Domains (2) summary
    cd09998
    Location:185 → 597
    HDAC_Hos3; Class II histone deacetylases Hos3 and related proteins
    PHA03247
    Location:814 → 1211
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein
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