U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SPANXA2-OT1 SPANXA2 overlapping transcript 1 [ Homo sapiens (human) ]

Gene ID: 619455, updated on 13-May-2022

Summary

Official Symbol
SPANXA2-OT1provided by HGNC
Official Full Name
SPANXA2 overlapping transcript 1provided by HGNC
Primary source
HGNC:HGNC:31683
See related
Ensembl:ENSG00000277215 AllianceGenome:HGNC:31683
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXorf18
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SPANXA2-OT1 in Genome Data Viewer
Location:
Xq27.2
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (141502849..141649939)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (139811490..139958661)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (140590843..140738069)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene RBMX2 pseudogene 2 Neighboring gene NADH:ubiquinone oxidoreductase subunit B3 pseudogene 5 Neighboring gene sperm protein associated with the nucleus, X-linked, family member A1 Neighboring gene SPANX family member A2 Neighboring gene uncharacterized LOC645188 Neighboring gene SPANX family member D Neighboring gene MAGE family member C3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • SPANXA2 overlapping transcript 1 (non-protein coding)

Clone Names

  • FLJ36186

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037183.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC234774, AC240443
    Related
    ENST00000622372.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    141502849..141649939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    139811490..139958661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)