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SCARNA9 small Cajal body-specific RNA 9 [ Homo sapiens (human) ]

Gene ID: 619383, updated on 13-May-2022

Summary

Official Symbol
SCARNA9provided by HGNC
Official Full Name
small Cajal body-specific RNA 9provided by HGNC
Primary source
HGNC:HGNC:32566
See related
Ensembl:ENSG00000254911 AllianceGenome:HGNC:32566
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Z32; mgU2-19/30
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Genomic context

See SCARNA9 in Genome Data Viewer
Location:
11q21
Exon count:
1
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (93721514..93721866)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (93637895..93638245)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (93454680..93455032)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 223, pseudogene Neighboring gene N-6 adenine-specific DNA methyltransferase 1 (putative) pseudogene Neighboring gene centrosomal protein 295 Neighboring gene small nucleolar RNA, H/ACA box 25 Neighboring gene small nucleolar RNA, H/ACA box 32 Neighboring gene TATA-box binding protein associated factor, RNA polymerase I subunit D

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • lncC11orf54-1
  • mgU2-19/30 scaRNA

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002569.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AV737883, C19000, EH348052
    Related
    ENST00000530422.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    93721514..93721866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    93637895..93638245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)